Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 183 / 5e-53 F-box/RNI-like superfamily protein (.1) AT1G67390 73 / 8e-14 F-box family protein (.1) AT3G26922 71 / 1e-13 F-box/RNI-like superfamily protein (.1) AT4G10400 70 / 1e-12 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT5G22730 70 / 1e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G78760 69 / 1e-12 F-box/RNI-like superfamily protein (.1) AT1G51370 68 / 3e-12 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) AT3G50710 66 / 1e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G53840 66 / 2e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G26030 65 / 4e-11 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030920 [exp] 837 / 0 AT1G13570 179 / 1e-51 F-box/RNI-like superfamily protein (.1) Lus10019144 [exp] 187 / 2e-54 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10034414 [exp] 183 / 5e-53 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10034415 [exp] 136 / 1e-36 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10041818 [exp] 122 / 3e-30 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10040760 [exp] 109 / 7e-26 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1) Lus10004852 [exp] 107 / 9e-25 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10006346 [exp] 102 / 1e-23 AT1G13570 140 / 2e-37 F-box/RNI-like superfamily protein (.1) Lus10004851 [exp] 102 / 2e-23 AT1G13570 139 / 7e-37 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G039700 [exp] 213 / 1e-64 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 209 / 1e-62 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.010G134200 [exp] 200 / 2e-59 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 160 / 2e-44 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.008G110400 [exp] 160 / 5e-44 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1) Potri.011G098700 [exp] 74 / 7e-14 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.004G034500 [exp] 71 / 7e-13 AT1G61330 175 / 3e-49 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G136200 [exp] 63 / 2e-10 AT1G56400 215 / 2e-64 F-box family protein (.1.2) Potri.011G104100 [exp] 62 / 2e-10 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.013G146800 [exp] 61 / 6e-10 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10030569 pacid=23140735 polypeptide=Lus10030569 locus=Lus10030569.g ID=Lus10030569.BGIv1.0 annot-version=v1.0 ATGGATACCCCCGGTATAGTGGATCCTAGTTCAACATTGGATAGGCTAAGTACTCTTCCAGGTAATGTGATCGACAACATTCTATCATGTTTGTCGATAA AAGAAGCTGCAAGGACGAGTTGCTTATCCAAGCATTGGAAGGAAAAATGGCACACTGTCCCCTATGTTATCCTTGCGGAAAAAATGTTGAGCGAAAGAAT GCAATCGCAGATCGAAGGCATCGTAACTTACATACTCACCAAACATGCTGGAGACCTCGAGACATTCTCGCTCTCAGTCAACACGGTGAAGTTCTTCTAC GACATGAAAGCGTGGATATGGAGGCTATCTCGGAAATCAATCCAAGAACTCACCATTAAGGTCCACAGAGGGGCACGCCACGACGTCCCTGTGGACTTGT TCTTCTGCGAGCAGCTGAAGAAGTTAACCCTTCGGCATTTCCAGTTCAGACCTCCGAGCAGCTTTAGAGGGTTCCGGAATCTGACGAGCCTCGATCTTAA GAAAGTGACCATATCGAAAGAAGCGCTCGAGAGTTTGTTAGCAAGCTGCCCGAATCTCGAGACATTAGTTCTCAAGAGGCTGAGCTGCGTGGATCATCTC CATTTCAACGCTTCGAACCTCAAGTACTTGGACTTTGGCGGGGAATTCAAATCCATGTGCTTCAATGCTCCGTTTATCTCTCTCTTGGCTATAAACATGT ACCGGATCGGGTCCGAGCAGAACAACTTCGATTTGAGGTTCATAATCCGCGGCCTGCCTCCCGCTATCGGGGAGCTTAGAGTGTGGTGTCCTTTTAAGAC GTTCTTGCCTGCAGGAAATCGGCTTGCTCAGCTCTCGACTTCTTACAACAACTTAGGAACGTTCGTATTGGACAATTTCTGCTTCAAGAAGGTGGACGAG GTCTCGTGTCTTCTTTCGATGAGTAGATGCTTCCCTAACCTGCACTCTCTCGAGATTCAGGCATGTAGCTGCGATAACGAAGTTGTGCAAGTTGCGGTTT TGGCATTCTGGGAAGAAGACAAGCAGCCGACTTGCTTGTTTGACCGGCTGCGTAAGGCCAGGGTGAGGTCGTTCCATGGGGAAGATCCCGAAATGAGGTT TATCAAGTTTGTATTGGCGAATTCGCCCGAGCTGGTCGAGATGAGTGTGGAGCCCAGTTCTATCCCCGACTACGACGAAACGGTACTAACTACTCAACTG ATGGATTTGCCTCGAGCCTCAGAGAAAGCCAAAGTGAACTATGTTCCGTACAACGCTGACCCTGATCCGGAAGATTTCTCGGAGGATGATGGTAACAGCT CAGACGATTCGTACTCCTCAGATAGTGATTAA
AA sequence Show only first row Show all	>Lus10030569 pacid=23140735 polypeptide=Lus10030569 locus=Lus10030569.g ID=Lus10030569.BGIv1.0 annot-version=v1.0 MDTPGIVDPSSTLDRLSTLPGNVIDNILSCLSIKEAARTSCLSKHWKEKWHTVPYVILAEKMLSERMQSQIEGIVTYILTKHAGDLETFSLSVNTVKFFY DMKAWIWRLSRKSIQELTIKVHRGARHDVPVDLFFCEQLKKLTLRHFQFRPPSSFRGFRNLTSLDLKKVTISKEALESLLASCPNLETLVLKRLSCVDHL HFNASNLKYLDFGGEFKSMCFNAPFISLLAINMYRIGSEQNNFDLRFIIRGLPPAIGELRVWCPFKTFLPAGNRLAQLSTSYNNLGTFVLDNFCFKKVDE VSCLLSMSRCFPNLHSLEIQACSCDNEVVQVAVLAFWEEDKQPTCLFDRLRKARVRSFHGEDPEMRFIKFVLANSPELVEMSVEPSSIPDYDETVLTTQL MDLPRASEKAKVNYVPYNADPDPEDFSEDDGNSSDDSYSSDSD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13570			F-box/RNI-like superfamily pro...		Lus10030569 [exp]	0	1
AT1G67300			Major facilitator superfamily ...		Lus10034930 [exp]	13.3	0.7961
AT5G38895			RING/U-box superfamily protein...		Lus10034367 [exp]	18.2	0.7420
AT1G43130		LCV2	like COV 2 (.1)		Lus10018868 [exp]	26.6	0.7520
AT1G55915			zinc ion binding (.1)		Lus10037337 [exp]	26.9	0.7409
AT1G03080			kinase interacting (KIP1-like)...		Lus10014687 [exp]	28.7	0.7609
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10025376 [exp]	33.8	0.7298
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10039977 [exp]	44.2	0.7006
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10030947 [exp]	45.5	0.6847
AT4G03420			Protein of unknown function (D...		Lus10033707 [exp]	50.8	0.6977
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10012631 [exp]	52.6	0.7001

Compare expression of checked genes

Lus10030569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.