Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26190 984 / 0 Phosphoribulokinase / Uridine kinase family (.1) AT1G73980 833 / 0 Phosphoribulokinase / Uridine kinase family (.1) AT2G01460 216 / 9e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G40870 83 / 1e-16 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT1G55810 82 / 3e-16 UKL3 uridine kinase-like 3 (.1.2.3) AT4G26510 81 / 9e-16 UKL4 uridine kinase-like 4 (.1.2) AT3G27190 77 / 1e-14 UKL2 uridine kinase-like 2 (.1) AT3G27440 71 / 7e-13 UKL5 uridine kinase-like 5 (.1) AT1G32060 66 / 2e-11 PRK phosphoribulokinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030919 [exp] 1287 / 0 AT1G26190 1007 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009040 [exp] 907 / 0 AT1G73980 971 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009678 [exp] 900 / 0 AT1G73980 962 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10025598 [exp] 235 / 2e-66 AT2G01460 1419 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10027063 [exp] 231 / 8e-65 AT2G01460 1457 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041569 [exp] 85 / 6e-17 AT5G40870 853 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10035216 [exp] 83 / 2e-16 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10021310 [exp] 81 / 7e-16 AT4G26510 753 / 0.0 uridine kinase-like 4 (.1.2) Lus10016989 [exp] 82 / 8e-16 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134400 [exp] 982 / 0 AT1G26190 968 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.008G110500 [exp] 961 / 0 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.015G055400 [exp] 921 / 0 AT1G73980 953 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.008G130200 [exp] 226 / 4e-63 AT2G01460 1337 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G111900 [exp] 223 / 3e-62 AT2G01460 1325 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G069600 [exp] 89 / 2e-18 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G332100 [exp] 87 / 8e-18 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.017G071200 [exp] 81 / 6e-16 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1) Potri.001G467800 [exp] 80 / 1e-15 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3) Potri.011G165100 [exp] 80 / 1e-15 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0273 [flax] [poplar] CYTH PF01928 [flax] [poplar] CYTH CYTH domain CL0023 [flax] [poplar] P-loop_NTPase PF00485 [flax] [poplar] PRK Phosphoribulokinase / Uridine kinase family
Representative CDS sequence Show only first row Show all	>Lus10030570 pacid=23140784 polypeptide=Lus10030570 locus=Lus10030570.g ID=Lus10030570.BGIv1.0 annot-version=v1.0 ATGGGAGAAGATGCTTCGGGTTCTGAATCACACCCAAAGAAGCAGGGACTTTTGAAGGACCAGGTTAGGTTGGCGAAGAGGAAGGATTCTGACCGATACA AGATTGTTCCGATTCAAGAGTCATTGTCATTCGAGAAGGGCTTCTTTGTAGTGATACGTGCATGCCAATTACTGGCCCAAAAGAATGATGGGATCATTTT GGTAGGTCTGGCTGGTCCTTCTGGGGCTGGTAAGACCATGTTCACTGAAAAGATAATCAATTTCATGCCCAGCGTTGCTGTCATATCTATGGACAATTAC AACGACGCCAGCCGGATTGTTGATGGAAATTTTGATGATCCACGATTGACTGACTATGACACATTGCTTAAAAATGTTCAAGATCTAAAAGCTGGAAAAT CTGCAGAGGTACCAGTCTATGATTTCAAGTCTAGCTCCCGCACGGGATACAGAACAGTTGAAGTTCCAGAATCACGCATTGTGATCATAGAAGGGATATA TGCCCTAAGTGAAAAGTTACGCCCTTTGCTGGACTTGCGAATATCCGTTAGAGGGGGGATTCATTTTGATCTCGTTAAGCGTGTTTTACGAGATATTCAA CGTGCTGGACAGGAACCGGAAGAAATAATCCACCAGATATCTGAAACGGTATACCCGATGTATAAAGCCTTCATAGAGCCAGATCTTCAAACTGCTCACA TAAAAATTATAAACAAGTTCAACCCATTCACTGGATTCCAGAATCCGACTTACATCTTGAAGTCAGCAAGAAACGTGGCTGTAGATAAAATCAAGGCTGT CTTGTCCGAAGGACACACCGAGACGGAGGAGCAAACATATGACATATATCTTCTGCCACCTGGTGAAGATCCGGAGTCATGCCAATCATATCTAAGGATG CGCAACAAAGAAGGAAAATACAATCTTATGTTTGAGGAATGGGTGACTGATGCGCCGTTTGTCATTTCTCCGAGGATCACGTTCGAAGTTAGTGTCCGTC TTCTTGGTGGGTTGATGGCTTTGGGGTATACGATTGCAACCATCCTTAAAAGGAGTAGCCATGTGTTCTTCAACGACAAAGTATGTGTCAAAGTTGATTG GCTAGAACAACTGAATCGTCAGTATATTCAGGTGCAAGGAAGAGATCGACTGGCCGTGAGGTATGTTGCAGAGCAACTAGGTTTGGAAGGTTCATATATT CCACGTACATATATCGAACAAATCCAACTGGAGAAGCTTGTAGATGAAGTGATGGCTTTGCCAGATGATTTGAAGAATAAGCTTAGCCTAGATGATGACT TAGTTTCTAGCCCCAGAGAAGCACTTCTTCGAGCATCTGCCGATCGGGTTGCAATGAGAAACAAGCACCTCAGTGGAATGTCACATTCATATTCAACTCA AGGTGACAAGAGCTACTCCAAGCTCGCTGCATTCTCAAATGGAAACCGTAGGTATGAGGATAGAAATTCGGAGCCCCAAGCAATGCTGGCAAACCAGGGA GTGATGACTCAGCTTTCGGAACAGATGACATCACTAAATGATAGAATGGATGATTTTACATCTCAACTAGAAGAACTGAACACCAAGCTAACCGTGATGA ACAATTCTCCTCGTCAGCAAAACATCGGCGGGCAGGGCGAGTCAAGCAACGGCTCTGCTCCTACATCTTACTTCATGTCCGGCTTAAGCAACTGTTCGCT GACCGGTTCAAAGCAGCAACTGCCTCATTCGTCCTCGTTTTCCCAGTTAGCCAAGGATTCGCCTCTACTGGAAGAGATCGTTCGAGGACAACGCCAAATC ATGCACAAGTTGGACAGTTTCACCAGCCTCCTGCACGAGGCGACAGCAGAGAGGTCCAAGCAAGCTAGGAAAGGAAACAAGCTAACAGTGGCTGACATGA ACACCATTGGAGTTCCTCTGGTTTTATCCATGGCAATTGGTGGGTTAGGGCTGTTGCTGTTTAGGAGCTTTCATAACAGCGGATAA
AA sequence Show only first row Show all	>Lus10030570 pacid=23140784 polypeptide=Lus10030570 locus=Lus10030570.g ID=Lus10030570.BGIv1.0 annot-version=v1.0 MGEDASGSESHPKKQGLLKDQVRLAKRKDSDRYKIVPIQESLSFEKGFFVVIRACQLLAQKNDGIILVGLAGPSGAGKTMFTEKIINFMPSVAVISMDNY NDASRIVDGNFDDPRLTDYDTLLKNVQDLKAGKSAEVPVYDFKSSSRTGYRTVEVPESRIVIIEGIYALSEKLRPLLDLRISVRGGIHFDLVKRVLRDIQ RAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSARNVAVDKIKAVLSEGHTETEEQTYDIYLLPPGEDPESCQSYLRM RNKEGKYNLMFEEWVTDAPFVISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFFNDKVCVKVDWLEQLNRQYIQVQGRDRLAVRYVAEQLGLEGSYI PRTYIEQIQLEKLVDEVMALPDDLKNKLSLDDDLVSSPREALLRASADRVAMRNKHLSGMSHSYSTQGDKSYSKLAAFSNGNRRYEDRNSEPQAMLANQG VMTQLSEQMTSLNDRMDDFTSQLEELNTKLTVMNNSPRQQNIGGQGESSNGSAPTSYFMSGLSNCSLTGSKQQLPHSSSFSQLAKDSPLLEEIVRGQRQI MHKLDSFTSLLHEATAERSKQARKGNKLTVADMNTIGVPLVLSMAIGGLGLLLFRSFHNSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26190			Phosphoribulokinase / Uridine ...		Lus10030570 [exp]	0	1
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10026528 [exp]	12.5	0.8242
AT1G19340			Methyltransferase MT-A70 famil...		Lus10032722 [exp]	13.1	0.8153
AT1G73020			unknown protein		Lus10009732 [exp]	21.4	0.8062
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10028778 [exp]	21.5	0.7977
AT4G29540		AtLpxA	bacterial transferase hexapept...		Lus10032684 [exp]	27.1	0.7749
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10024562 [exp]	27.5	0.8052
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10024057 [exp]	28.4	0.8058
AT4G39740		HCC2	homologue of copper chaperone ...		Lus10016805 [exp]	29.4	0.7561
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Lus10038957 [exp]	29.6	0.8012
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10041229 [exp]	35.6	0.7884

Compare expression of checked genes

Lus10030570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.