Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24550 444 / 4e-151 BGLU32 beta glucosidase 32 (.1) AT2G44480 438 / 5e-149 BGLU17 beta glucosidase 17 (.1.2) AT3G60140 439 / 2e-148 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT2G44460 438 / 5e-148 BGLU28 beta glucosidase 28 (.1) AT5G24540 436 / 1e-147 BGLU31 beta glucosidase 31 (.1) AT3G60120 428 / 8e-145 BGLU27 beta glucosidase 27 (.1) AT5G44640 421 / 1e-142 BGLU13 beta glucosidase 13 (.1) AT1G26560 421 / 2e-142 BGLU40 beta glucosidase 40 (.1) AT5G42260 421 / 2e-142 BGLU12 beta glucosidase 12 (.1) AT2G44490 420 / 3e-141 BGLU26, PEN2 PENETRATION 2, BETA GLUCOSIDASE 26, Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012869 [exp] 892 / 0 AT5G24550 467 / 4e-160 beta glucosidase 32 (.1) Lus10030518 [exp] 875 / 0 AT5G24550 485 / 3e-167 beta glucosidase 32 (.1) Lus10039513 [exp] 870 / 0 AT2G44480 472 / 3e-162 beta glucosidase 17 (.1.2) Lus10030911 [exp] 869 / 0 AT5G24550 475 / 1e-163 beta glucosidase 32 (.1) Lus10030516 [exp] 865 / 0 AT2G44480 476 / 4e-164 beta glucosidase 17 (.1.2) Lus10024152 [exp] 861 / 0 AT5G24550 479 / 1e-164 beta glucosidase 32 (.1) Lus10012871 [exp] 835 / 0 AT5G24550 466 / 1e-157 beta glucosidase 32 (.1) Lus10012868 [exp] 787 / 0 AT5G24550 435 / 1e-145 beta glucosidase 32 (.1) Lus10039541 [exp] 763 / 0 AT2G44480 400 / 6e-135 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015100 [exp] 513 / 3e-178 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 505 / 2e-175 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.005G059500 [exp] 498 / 5e-172 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.001G223300 [exp] 484 / 5e-167 AT2G44480 529 / 0.0 beta glucosidase 17 (.1.2) Potri.T085301 [exp] 483 / 8e-167 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 483 / 1e-166 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.001G222904 [exp] 483 / 2e-166 AT2G44480 531 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222900 [exp] 483 / 3e-166 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222704 [exp] 482 / 3e-166 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.004G109166 [exp] 478 / 1e-164 AT5G42260 525 / 0.0 beta glucosidase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10030577 pacid=23140754 polypeptide=Lus10030577 locus=Lus10030577.g ID=Lus10030577.BGIv1.0 annot-version=v1.0 ATGGCTTTAGCAATTGTAGTGATGATGTTTCTGCCAAGCCTCCTGGCTGCTGGCATCTCTGAGTTATCAGCTCAGGGAATCCCAAGCACTGACCCTTGCT TACAATCCACCTACGTATACGCACCCTCATCGGAGCTCCCCAACGGCCGATTCGATTTCCCTAATGGGTTCATCTTCGGCACAGCCACTTCTGCTTTTCA GATCGAGGGTGCTGCAAATTTTACGTATGGAAAGGGTCCGAGCGTCTGGGATAGGTTCACCCATGACTTTCCAGATAGGATTATGGGAGGCGGTAATGGA GATATCGCGATAGATCATTACCATATGTTCTCGGAAGACATAACGAGAATGAAGTACCTGAACGTTGATGCTTACAGATTCTCCATCTCATGGCCTCGAC TCATACCGACTGGCAAGAGAAGCGACGGAGTCAATCAACAAGGAATTGACTTTTACCATACCCTCCTTGACACACTCAGTGAGAATGGAATCAAGGCTTT TGTCACAATATGGCATTGGGATACCCCTCAAGGTCTCGAAGCGGAGTATGGCGGCTTTTTAAGCCGCGATATTGTGAAAGACTTTGAGGATTATTGCGAC CTCTTGTTTCAAGAATATGGTGGGAAAGTGTATAAATGGATAACGTTGAATGAGCCTCAGGGTATTTCAATGAAAGCTTATGACGAAGGTGTTTTCGCAC CCGGACATTGTTCTGTATGGGTTAACAGAAAATGTCAACTAGGAGACTCTGGAACCGAACCTTATATTGTTACCCATAATCTTCTTCTTGCCCATTCTGC TGCTTATCACTTATACAAGACCAAGTATCAGAATCTGACCGCAGAAATAGGAATAACTCTTGTCACACATTGGTTTGTTCCTTACTCTAATGCAACTGAA GATGTTGATGCTGCCCAAAGAGCTTTAGACTGGATGTTTGGTTGGTACATGGATCCACTAACCTACGGTTACTACCCTACAACTATGGTACAACTATTGG GATCTCGTTTACCAACATTCACGGAAGAGGAGTCACAGTTACTTAAAAAATCATATGATTTTTTAGGCCTCAATTATTATACTGGTTTTTATGTGAGGAA CAATAATAATTTTGATCCTGTACATCTTCGATGGGCAACTGATAACCACGGCATTACTACACCTGACAGAGACGGACAATACATTGGACCACCTTTGGGT TCGTATTGGCAATATCTGTATCCCGAAGGTATGCGATTGCTGTTAGAGTACACCCAAGCAACTTACGATGATCCCATCATTTACATAACTGAGAATGGAA TGTCGGCAAAGGACAATGCTACTCAAACGCTGGCAGAGGCGTTGATGGACGAGATGAGGATTAATTTCTACAACAGCCATCTTGCAAAAGTGCTGCAAGC CATGAATGAGAAGAATGTGCAAGTGAAAGGGTTCTTTGCATGGTCGTACGCCGACAACTTCGAATGGAACGAGGGCTACACGGTCAGGTTCGGACTATAC TACATCAACTACACCGACCTCTCCAGACACCCGAAGGATTCTGCTTGCTGGTACACCAATTTCTGCAACAAGACACAGCCTGCGCCATCTTTTAACTACT TTGATCTCGATCAGCTCATCACTGCTCGTGCTGCTCTCGGAGGCCGCCGTGCTCTCTCCTCCTCTGCCCGCGGCCTTTATTAA
AA sequence Show only first row Show all	>Lus10030577 pacid=23140754 polypeptide=Lus10030577 locus=Lus10030577.g ID=Lus10030577.BGIv1.0 annot-version=v1.0 MALAIVVMMFLPSLLAAGISELSAQGIPSTDPCLQSTYVYAPSSELPNGRFDFPNGFIFGTATSAFQIEGAANFTYGKGPSVWDRFTHDFPDRIMGGGNG DIAIDHYHMFSEDITRMKYLNVDAYRFSISWPRLIPTGKRSDGVNQQGIDFYHTLLDTLSENGIKAFVTIWHWDTPQGLEAEYGGFLSRDIVKDFEDYCD LLFQEYGGKVYKWITLNEPQGISMKAYDEGVFAPGHCSVWVNRKCQLGDSGTEPYIVTHNLLLAHSAAYHLYKTKYQNLTAEIGITLVTHWFVPYSNATE DVDAAQRALDWMFGWYMDPLTYGYYPTTMVQLLGSRLPTFTEEESQLLKKSYDFLGLNYYTGFYVRNNNNFDPVHLRWATDNHGITTPDRDGQYIGPPLG SYWQYLYPEGMRLLLEYTQATYDDPIIYITENGMSAKDNATQTLAEALMDEMRINFYNSHLAKVLQAMNEKNVQVKGFFAWSYADNFEWNEGYTVRFGLY YINYTDLSRHPKDSACWYTNFCNKTQPAPSFNYFDLDQLITARAALGGRRALSSSARGLY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030577 [exp]	0	1
AT5G67265			unknown protein		Lus10042633 [exp]	9.9	0.7923
AT3G53010			Domain of unknown function (DU...		Lus10042636 [exp]	10.9	0.6866
AT2G39210			Major facilitator superfamily ...		Lus10037948 [exp]	17.1	0.6895
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014586 [exp]	18.6	0.6893
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040727 [exp]	18.9	0.7602
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10042641 [exp]	51.3	0.6977
					Lus10013098 [exp]	74.9	0.6150
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Lus10020478 [exp]	80.2	0.6639
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10031545 [exp]	94.0	0.6398
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002738 [exp]	111.9	0.6586

Compare expression of checked genes

Lus10030577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.