Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68930 907 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G22070 608 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 549 / 3e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 538 / 4e-175 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 523 / 4e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 514 / 9e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 503 / 4e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 501 / 2e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09410 493 / 5e-159 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G13600 490 / 5e-158 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030908 [exp] 2345 / 0 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10016425 [exp] 642 / 0 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013052 [exp] 530 / 1e-175 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10029110 [exp] 516 / 1e-170 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10028593 [exp] 514 / 2e-167 AT5G16860 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018897 [exp] 533 / 3e-166 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022629 [exp] 509 / 8e-166 AT2G41080 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013540 [exp] 513 / 2e-165 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 513 / 4e-165 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136200 [exp] 1141 / 0 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G085500 [exp] 610 / 0 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G155100 [exp] 563 / 0 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G027800 [exp] 553 / 1e-180 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 538 / 3e-175 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136100 [exp] 528 / 3e-174 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.017G091600 [exp] 530 / 2e-173 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G075000 [exp] 521 / 4e-170 AT2G41080 755 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G012500 [exp] 522 / 8e-170 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 525 / 3e-169 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030581 pacid=23140710 polypeptide=Lus10030581 locus=Lus10030581.g ID=Lus10030581.BGIv1.0 annot-version=v1.0 ATGGAGATGGAAATTAGTGAGAAGGATAAGCTTGAGCTGGAAAAGAGGGATGATGTTGATAACCCTATGAACTATCAATCATCTGGTGGTGGTTTATCTT CAGACTGGCGTTTCGGTGGTGGTGCTAATGTAGCGAATTCGACTCTAGGTGGTGCAGCTTCTTGCTCATCTGCTGCTATGGGAGAAGAATCATTTGGTGG TCCTGCTGGTATCTGGGATCACCAGGCTAGTTCACAAAACATAGGGTTTTGTGACTTGATCAATGCCCCAGGAACCCCATTAGGCATGGTAAAAGGCGGG GGAGCCCTCGGTATGGGTTGGAATCCACATAGCTCAATGTCGAGGGGGAGTGGCATTTTCTTGCCGAATCCCCATGGAATACTTCCCCCGAGCTTATCCC CATTTCCAGCTGATCCTGCTTTCATTGAGAGAGCTTCGAGGTTTTCGTGCTTCAGCAGTGGTGGCCAGTTTAGCGACATGGCTCATCCGTTTGCAATGTC TGAAGCTATGGGTCTTTACTCCAGAGGAGGCGGCATGATTCCAGTACCACCACAGGAGGTATTTGCAGGCAGCGGGTCGAAATCGTTATCAGGTCAGAGA AACATGATGATGAATCCAGGAGAATGTTCTACAGAGGTAACAGATGCTTCTTTGCGTATGGATCATCATGCCAAAACTGAAGAAAGCCCACTTAAGAGCG AGAGAAGAAGCGAAAGTGTTGTCAGATCTCAGGATGAAGTAAAACCAGGCGTGGTTAGATCCGGTAATGACTCCGATGAAGCTGAATTTAGTGGTGGTGG TGGTCAAGATGACGCTACTATGTTGGAGGGAAATGGTGGGAAAATGTCATGTAAGGTCCTCGACTCAAGGAAAAGGAAAAGGAATGGACAGGACACTGAG CATGATGCAGGGAAAGGAAGCCAGCAATCCGGCGAAAGTACGAAGGATGGCTCGGAAATACACCAGAAGGGAGGTAAGAATCCGAGTCCGGCAGCTAACA AGGCATCTGGGAAAAATGGCAAACAAGGAGGATCTCAAGTATCTGATCCAGCAAAAGAAGAATATATTCATATTAGAGCTCGAAGAGGACAAGCAACTAA TAGCCATAGTCTTGCAGAGAGAGTAAGAAGAGAGAAGATCAGTGAAAGAATGAAGTATCTGCAGGACCTCGTTCCTGGATGTAACAAGGTCACAGGCAAG GCAGTAATGCTGGACGAAATTATCAATTACGTACAATCGTTACAACGGCAGGTGGAGTTTTTGTCGATGAAGCTCGCAACGGTTAATCCACGGATGGATT TTAACAGCCTTGAAGGGCTCTTATCAAAAGATGCAACATCAAGAGCTATTCCTTCAGCTAGTCTGCCCTTTTCACCAGAAATGCCTATGCCTTATCCCCC ATTACACCCATCTCAATCCGGACTCATCCCACCTGGTTTTCCTGCGATGGGGAACCATTCCGACATCCTCCGACGAACTATTGGCTCTCAGTTAGCTTCT TCAAGTGGAGAATTCAAGGATCCTGCTCAGCTACCGAGTTCATGGAACGAGGAGCTGCACAATGTAATCCAGATGTATGGCACTGCCGGACCTCAAGATA GCCAAGAGATAACTGCCATTTCCAACCGGTACTCATCCTTCCTCAAGCTCTACTGCGAAACCCGGAACCAGACCCAAGTGAAGAAGCTCCACTGCCACAT CCTCAGGACTCTACTTAATCCGGAACCATTCCTCTCCAACAATCTAATCAACGCCTATGGCCAACTACGCAATCCATCTTACGCCCGCAACGTGTTCGAT GAAATGCCCCAACGAACCCCTTTCTCCTGGAACACCCTCCTCTCTGCTTACTCCAAGTCCGGAGACATCTCTCAAATGCAAGAGGTCTTCAACCTCATGC CGATTATAGATGGGGTGTCCTGGAACTCGCTTATTTCCGGGTATGCAAATCACGGATCGGTTGATGAAGCTGTTAAGGCTTATGGTATGATGCTGAGGAA TGATGCAGGTAACGTGAATCGAATTACTTTTTCGACGTTGCTTATATTATGTTCGAGCCGAGAGCTTGTTGTATCGGGTAGAGCGATTCATGGGCAGATA GTTAGACTCGGGTTCAGGGATTGTGTATTTGTTGGCAGTGCTTTGGTGGATATGTATTGTAAGATAGGATCAGTGAATGAGGCAGTGCAAGCATTCTACG AGATTCGGGAAAAGAACGTTGTAATGTATAATACATTGATCACGGGACTTTTACGGCATGGTATGGTGGAGGATGCCAGGAGAATCTTTCATAGTATGAA GGACCGAGATTCTATTACTTGGACGACGATGATTACTGGCTTTGTACAGAACGGATTAGATAGAGATGCTCTTGATTTGTTTCGTGAGATGAGAGTAGCT GAGATGGAAATTGATCAGTTTACTTTCGGTAGTGTCCTGACTGCTTGCGCAGGGGTTAAGGCTCTGGATGACGGGAAGCAAGTTCATGCATTTATCATTA GGAAGGATTATAAAGGTAACGTCTTTGTGGACAGTGCTCTTCTTGACATGTATTGCAAATGTCATAATGTAAGCTATGCCGAAGCAGTTTTTCGGAGAAT GAAGGTTAGGAATGTTGTGTCGTGGACAGCAATGCTGGTGGGGTACGGGCAGAACGGATTCAGCGAGCAAGCTATTAGGATTTACTCGGAAATGCAGCGG AATGGGATCAAGCCTGAAGATTTTACTATTGGTAGTGTGATCAGTTCATGTGCTAATATAGCGAGTTTAGAAGAAGGTACTCAATTCCATGCTCAAGCGT TGATGTCAGGGTTGATTTCTTCGATTACAGTATCCAATGCGCTCATTACTCTGTACGGGAAATGTGGAAGCGTGGAGGAATGCGATCGGCTGTTCCACGA GATGAAGTTTCGAGACGAAGTTTCTTGGACCGCCATGGTTTCAGGATACGCGCAGTTCGGAAAAGGTGAAAAGACCATTGACTTGTTTGAGGAGATGTTG AGGAAAGGGCTAAAACCCGATTCGGTTACGTTCATAGGGGTGCTTTCGGCTTGTAGTAGAGCAGGGCTAGTAGAAAGGGGGAAGCAATATTTCGAATCAA TGTCGAGAGACCATGGTATAAATCCTACCCGTGATTCCTACACTTGCATGATTGACCTTTTGAGTCGAGCTGGAAGATTAGAAGAAGCAAAGAATTTCAT TCATAACATGCCTTTCTGTCCGGATGCGATCGGTTGGGCTACATTGCTGAGCTCTTGCAGATTCCATTCGAATCTCGAGATAGGGAAATGGGCGGCTGAG TCTCTGCTCGAAGTAGATCCCAATAATCCAGCAGGTTATATCTTGCTCACAAGTATCTACGCTTCTCGAGGAGAATGGAACAATGTCGCTCATTTAAGGC GAGGAATGCGAGAGAAGGGTTTAAGAAAGGATCCTGGATGCAGCTGGATCAAATTCAAGAACAAGGTGTATATTTTCTCAGCAGACGACTTCTCCAGCCC GTTTTATTATCAGATAAACGCCGAGCTGGAGAGATTATACGAGAAGATGATGCAGATGGGATACGTGCCGGATTCCAGCTCAGTTCTGCATGACGTGGAG GAATCTGAGAAGATAAAGATGCTCGGCCACCACAGCGAGAAGCTGGCAATCGCTTTCGGATTGATATTCATCCCTCGTGTCTGTCCTATAAGAGTAATTA AGAACCTGAGGGTGTGTAAGGATTGCCACACTGTTACTAAGTACATCTCGAAGATAACTCAGCGGGAGATCCTTGTTAGAGATTCTGTCCGGTTCCATTT GTTTAAAGATGGAGCTTGCTCTTGTGGAGATTTCTGGTAA
AA sequence Show only first row Show all	>Lus10030581 pacid=23140710 polypeptide=Lus10030581 locus=Lus10030581.g ID=Lus10030581.BGIv1.0 annot-version=v1.0 MEMEISEKDKLELEKRDDVDNPMNYQSSGGGLSSDWRFGGGANVANSTLGGAASCSSAAMGEESFGGPAGIWDHQASSQNIGFCDLINAPGTPLGMVKGG GALGMGWNPHSSMSRGSGIFLPNPHGILPPSLSPFPADPAFIERASRFSCFSSGGQFSDMAHPFAMSEAMGLYSRGGGMIPVPPQEVFAGSGSKSLSGQR NMMMNPGECSTEVTDASLRMDHHAKTEESPLKSERRSESVVRSQDEVKPGVVRSGNDSDEAEFSGGGGQDDATMLEGNGGKMSCKVLDSRKRKRNGQDTE HDAGKGSQQSGESTKDGSEIHQKGGKNPSPAANKASGKNGKQGGSQVSDPAKEEYIHIRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCNKVTGK AVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNSLEGLLSKDATSRAIPSASLPFSPEMPMPYPPLHPSQSGLIPPGFPAMGNHSDILRRTIGSQLAS SSGEFKDPAQLPSSWNEELHNVIQMYGTAGPQDSQEITAISNRYSSFLKLYCETRNQTQVKKLHCHILRTLLNPEPFLSNNLINAYGQLRNPSYARNVFD EMPQRTPFSWNTLLSAYSKSGDISQMQEVFNLMPIIDGVSWNSLISGYANHGSVDEAVKAYGMMLRNDAGNVNRITFSTLLILCSSRELVVSGRAIHGQI VRLGFRDCVFVGSALVDMYCKIGSVNEAVQAFYEIREKNVVMYNTLITGLLRHGMVEDARRIFHSMKDRDSITWTTMITGFVQNGLDRDALDLFREMRVA EMEIDQFTFGSVLTACAGVKALDDGKQVHAFIIRKDYKGNVFVDSALLDMYCKCHNVSYAEAVFRRMKVRNVVSWTAMLVGYGQNGFSEQAIRIYSEMQR NGIKPEDFTIGSVISSCANIASLEEGTQFHAQALMSGLISSITVSNALITLYGKCGSVEECDRLFHEMKFRDEVSWTAMVSGYAQFGKGEKTIDLFEEML RKGLKPDSVTFIGVLSACSRAGLVERGKQYFESMSRDHGINPTRDSYTCMIDLLSRAGRLEEAKNFIHNMPFCPDAIGWATLLSSCRFHSNLEIGKWAAE SLLEVDPNNPAGYILLTSIYASRGEWNNVAHLRRGMREKGLRKDPGCSWIKFKNKVYIFSADDFSSPFYYQINAELERLYEKMMQMGYVPDSSSVLHDVE ESEKIKMLGHHSEKLAIAFGLIFIPRVCPIRVIKNLRVCKDCHTVTKYISKITQREILVRDSVRFHLFKDGACSCGDFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030581 [exp]	0	1
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10014103 [exp]	2.0	0.7777
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10019024 [exp]	3.6	0.8401
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10035160 [exp]	6.7	0.7676
AT1G55150			DEA(D/H)-box RNA helicase fami...		Lus10015627 [exp]	7.3	0.8136
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10010156 [exp]	7.3	0.7757
AT3G49350			Ypt/Rab-GAP domain of gyp1p su...		Lus10022356 [exp]	9.3	0.7988
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Lus10038033 [exp]	15.4	0.7490
AT1G75420			UDP-Glycosyltransferase superf...		Lus10041786 [exp]	20.0	0.7193
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10016480 [exp]	21.0	0.7659
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10011938 [exp]	22.7	0.7776

Compare expression of checked genes

Lus10030581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.