Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37240 64 / 3e-11 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030907 [exp] 843 / 0 AT2G37240 64 / 3e-11 Thioredoxin superfamily protein (.1) Lus10029111 [exp] 655 / 0 AT2G37240 61 / 2e-10 Thioredoxin superfamily protein (.1) Lus10013051 [exp] 625 / 0 AT2G37240 60 / 4e-10 Thioredoxin superfamily protein (.1) Lus10014017 [exp] 74 / 1e-14 AT2G37240 316 / 1e-109 Thioredoxin superfamily protein (.1) Lus10019900 [exp] 64 / 1e-11 AT2G37240 214 / 7e-70 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G113000 [exp] 613 / 0 AT2G37240 62 / 1e-10 Thioredoxin superfamily protein (.1) Potri.010G136300 [exp] 606 / 0 AT2G37240 62 / 8e-11 Thioredoxin superfamily protein (.1) Potri.006G133100 [exp] 69 / 7e-13 AT2G37240 325 / 6e-113 Thioredoxin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030582 pacid=23140689 polypeptide=Lus10030582 locus=Lus10030582.g ID=Lus10030582.BGIv1.0 annot-version=v1.0 ATGGCTTCTTTCTCGATGGAGGATTTCGTGGGCAACGGCGTTCTGAAGCAGCTGCTTCCGAAGCTGTTGGAAGAAGGATGGGACGATGTGCCGACTTTGA AGATCATGAACTCTGAGGACATGGATGCTATGAACCTCACCAGGCGACAAAAGGATGCTCTGGAAATAAGAACATACCTGCATGATCGAGCTCTGATGAG CTACGGAGACAAACTAGAGGCCTCAGGGAAAGGCTTGCCGGAGCTTATTGCATTGGGAAACGAGCTGGCATCGAATTTCGGGATGAAGAGAGGCCACATA GCTCGTTTCCTGGACAAAACCAACGCTTGCACAGAACCTCCTAACAAGTCGGAAGCCAATTTCCCAATCAGGAAACCTCAGGCTCCATCCAGAAATGAGA GCCTTGTGCAGAGTTTTGCATCCGTTACCTCGAGAAAGATGCCGGCCATGTCGAGGTACCCTGCTACAGGAAACAACTACAACACGTCGTTTTACGACAA ATCCATCGAGCAGTCGATCGCTGATCTCAAGATCAAGGATGGTTATGTGTTCAAAGGGGTGGTTGCTTCGGGGCCGCCTGAGCCAAGAGCGTGTGGCTGC ATAGCTGCTCCTACAGTGGTTGAACAGGTTGCTCCCTATTCAGCCATTGAGAACATCACGGTTCAGAAACTGACCCCTGAGTATAAGATCGGGATGGCGC GGTTATTGAAGACCAAGGCGCCTCCGATGAAGGTTTCGGAACTGTGGCGTGACAGACCGGCTATATTTCTCTGTGTCAGACGTCCCGGATGCATAATGTG CAGAGCAGAAGCTCACCAACTCTATGCAAGAAAACCGATTTTCGACTCGATGGGAATCCAACTATTTGCAGTTCTACTAGAGCACATAGAGTCAGAGGTA CAAGAGTTCTGGCCGCGGTACTGGGGAGGAATGGTACTCTATGATCAGAGTATGGATTTCTTCAAAGCTCTTGGTGGTGGAAGCCTGCTCAAGGACAAGT TCATATCAGGGTTTCTGTTCAATCCTCGCGCGATTTCGAATTACAAACGAGCGAGAGCCATGGGACTGGAACAGAACTTCACCGGTGAAGGTGAGATCAA AGGTGGACTCTTGGTAGTAGGAAGGAAAAGGGCAGGCATTGCTTACCAGTTTGTCGAGAGGAACTTCGGCGATTGGGCTCCGATAGCTGAAGTAATTGGC ATCTGTAATCAGTTGCAGAACCAGCAGCAAGATCGAGGCGATCAGTCGATGATGCTATCTATACAGGAGTATGAGTGA
AA sequence Show only first row Show all	>Lus10030582 pacid=23140689 polypeptide=Lus10030582 locus=Lus10030582.g ID=Lus10030582.BGIv1.0 annot-version=v1.0 MASFSMEDFVGNGVLKQLLPKLLEEGWDDVPTLKIMNSEDMDAMNLTRRQKDALEIRTYLHDRALMSYGDKLEASGKGLPELIALGNELASNFGMKRGHI ARFLDKTNACTEPPNKSEANFPIRKPQAPSRNESLVQSFASVTSRKMPAMSRYPATGNNYNTSFYDKSIEQSIADLKIKDGYVFKGVVASGPPEPRACGC IAAPTVVEQVAPYSAIENITVQKLTPEYKIGMARLLKTKAPPMKVSELWRDRPAIFLCVRRPGCIMCRAEAHQLYARKPIFDSMGIQLFAVLLEHIESEV QEFWPRYWGGMVLYDQSMDFFKALGGGSLLKDKFISGFLFNPRAISNYKRARAMGLEQNFTGEGEIKGGLLVVGRKRAGIAYQFVERNFGDWAPIAEVIG ICNQLQNQQQDRGDQSMMLSIQEYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37240			Thioredoxin superfamily protei...		Lus10030582 [exp]	0	1
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10034244 [exp]	5.6	0.8607
AT3G42770			F-box/RNI-like/FBD-like domain...		Lus10021833 [exp]	6.3	0.8521
AT1G71690			Protein of unknown function (D...		Lus10003512 [exp]	6.9	0.8544
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10029816 [exp]	8.8	0.8554
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028864 [exp]	12.1	0.8416
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10038228 [exp]	15.6	0.7985
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Lus10004846 [exp]	16.4	0.8402
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10000559 [exp]	16.7	0.8503
AT1G74830			Protein of unknown function, D...		Lus10033123 [exp]	17.5	0.8229
AT3G24530			AAA-type ATPase family protein...		Lus10005293 [exp]	18.7	0.8434

Compare expression of checked genes

Lus10030582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.