Plant FIBer expression Database

Lus10030584 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G54630 426 / 3e-143 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030643
[exp]
962 / 0 AT3G54630 412 / 9e-139 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G208700
[exp]
602 / 0 AT3G54630 429 / 3e-144 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03801 Ndc80_HEC HEC/Ndc80p family
Representative CDS sequence
>Lus10030584 pacid=23140725 polypeptide=Lus10030584 locus=Lus10030584.g ID=Lus10030584.BGIv1.0 annot-version=v1.0
ATGAGAGGTAGTCGTCGCCGGCAGAAAGAATCCTTCAACCCTCAGCCGACGCCTGATCACCACAACAACAACCGCCAGTTCCCCTACGGAAACACCTCTC
GCGACTCCGACGCCAGCTTCGCCAGCAGTCGTCCTTCTTTAGTCGGCGTCGGCCGCTCCTCCATCACTCCCTTAGATGCCTACACCGACCGCTCCCAACA
ACATTCTGCGGTACGATCCATCAACTCCTATCTCAACTCTCACTCCTCTCTCCTCTCGCTTCGGACTCACCCAATCTCCTCCAGCAAAGAGATCACCGAA
ACCCTACAATTCCTTCTCCATCAGCTCGACTACCCGGTCTCCAAGCTTGAGGATGAACTCTTCTCTATACTTAAACTCCTCAATTGCCCCTTCAAGTTCA
ACAAATCTGCTCTCCGCGCCCCCAACACTCCTCATAATTTCCCTTCCTTCCTCGCCCTAATCCACTGGCTGGTTCAGATTGCCATGTGTAAGGAGAACCT
CGCCGAGAATTCCAATTCATTTCTCCAGCACAACAGTATTCTTGTTTATTCATCTGACAGTTACTTCAACTACATTCGCGGCGATGACGAGTCCGTGGAG
GCTTTAGATACGGAGTTCCTAGAGAAGCTGGAGAATGATAGGAATGGCGTGTCCGAGAGTATTAAGGTTTTACAGACGACTGGTGATGAATTAGCTGCCA
GAGCAGAAGCTTTGAAATCAGGGCCAACGGAAAAGGACAAGTTGGAGAAAGAGAAGGCTGTTTTGCAAGAGGATGTCACCAAGTTCCATGCCATGATTCA
GGAGTTTAATCAGAGCATTGAGGCCAGGGTGATGGTATTGGAAGACAAATCGAATGCACTTCAAACCAAAGTCGTGGAGAAAAAAAGGATAGATGTGGAG
AATGAGGAGTTGAGAAAACAGGTGGAAAGCCAGAGTTTCAATGCTAGGGATGCTGAAAGGATGAAGAGGGAGTTGCAGGCTGTGGAGAGAGATATTGGGG
AAGCAGAACATGCAAGGAATGTATGCGAGGAGAAGGTATGGGACCTTGACTCCACACTTGGTCATAAACTGAAGGAGCTTGACGCATTGGCCATGAATTG
CAACCAGGAGGCCACGAGATTGAAGTTCGACAACATATTTCAGTTTTCCCTGAATGCCAAGGGATCCACACCTGCTGAAGTAATGGGGATTGACTACAAG
TCTGCACTTAAACCGAAACTTGGTTCCATTACTGATGATATTAAGAAAAGATCTGTGTCAAATTTGGAGGATATGGCTTTACTTCAGAAACAATCATCCA
AATTAATGTCTAAGATAGACAGCAAACGAAACCATTTTGCCCAGATCCAATCTCATATTGATGAAATGGAAGGCCAGATGAATTTCTGGAAAAAAGAAAC
AGAAGATTATCTGACGAGATGTGACTTGGAAGGAAAAAACATGGTACAAGTCATAGACAGTGAGGCTCATAACTTAGTGTCAGTGGAAAGAGAAGCAGCA
GCTATTTTGCAGGACAATGAAATGAAGTTGCAAGATGCAATGAAAGAAAGCGAAGAAAAGATCCAAGTGAAAGCTAGGGAACTGTTCCTTCTGGTGGATT
CCATCTCAAAGTACAAGGAGCACGTCGACTCCAGAATCTCAGGTATGAAAAACAAGCTCACGGAAACTGTGGCTGGCGTGGCTGAGATGTGTTTGGGACA
AATGGACTGCGGCACAGATCTACCAATGGACCACATCTGTACACTGTAA
AA sequence
>Lus10030584 pacid=23140725 polypeptide=Lus10030584 locus=Lus10030584.g ID=Lus10030584.BGIv1.0 annot-version=v1.0
MRGSRRRQKESFNPQPTPDHHNNNRQFPYGNTSRDSDASFASSRPSLVGVGRSSITPLDAYTDRSQQHSAVRSINSYLNSHSSLLSLRTHPISSSKEITE
TLQFLLHQLDYPVSKLEDELFSILKLLNCPFKFNKSALRAPNTPHNFPSFLALIHWLVQIAMCKENLAENSNSFLQHNSILVYSSDSYFNYIRGDDESVE
ALDTEFLEKLENDRNGVSESIKVLQTTGDELAARAEALKSGPTEKDKLEKEKAVLQEDVTKFHAMIQEFNQSIEARVMVLEDKSNALQTKVVEKKRIDVE
NEELRKQVESQSFNARDAERMKRELQAVERDIGEAEHARNVCEEKVWDLDSTLGHKLKELDALAMNCNQEATRLKFDNIFQFSLNAKGSTPAEVMGIDYK
SALKPKLGSITDDIKKRSVSNLEDMALLQKQSSKLMSKIDSKRNHFAQIQSHIDEMEGQMNFWKKETEDYLTRCDLEGKNMVQVIDSEAHNLVSVEREAA
AILQDNEMKLQDAMKESEEKIQVKARELFLLVDSISKYKEHVDSRISGMKNKLTETVAGVAEMCLGQMDCGTDLPMDHICTL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G54630 unknown protein Lus10030584
[exp]
0 1
AT5G64730 Transducin/WD40 repeat-like su... Lus10003855
[exp]
7.1 0.7724
AT5G42520 BBR_BPC BPC6, BBR/BPC6,... ARABIDOPSIS THALIANA BASIC PEN... Lus10024313
[exp]
10.1 0.6814
AT3G53220 Thioredoxin superfamily protei... Lus10013827
[exp]
17.4 0.7249
AT2G47620 CHB1, ATSWI3A SWITCH/sucrose nonfermenting 3... Lus10032555
[exp]
23.7 0.7018
AT2G27350 OTLD1 otubain-like deubiquitinase 1,... Lus10005193
[exp]
46.3 0.6635
AT4G10925 Nuclear transport factor 2 (NT... Lus10032407
[exp]
89.0 0.6350
AT1G51745 Tudor/PWWP/MBT superfamily pro... Lus10006874
[exp]
93.8 0.6079
AT1G63250 DEA(D/H)-box RNA helicase fami... Lus10019121
[exp]
109.0 0.5674
AT1G60800 NIK3 NSP-interacting kinase 3 (.1) Lus10030898
[exp]
113.4 0.5866
AT3G20430 unknown protein Lus10007452
[exp]
131.4 0.5953

Lus10030584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.