Plant FIBer expression Database

Lus10030585 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10740 736 / 0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
AT1G23330 723 / 0 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030904
[exp]
916 / 0 AT1G10740 763 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10013048
[exp]
825 / 0 AT1G10740 779 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10029114
[exp]
818 / 0 AT1G10740 778 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10030586
[exp]
431 / 1e-151 AT1G10740 356 / 1e-123 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G044400
[exp]
751 / 0 AT1G10740 719 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Potri.008G187900
[exp]
740 / 0 AT1G10740 709 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Potri.016G114350
[exp]
211 / 2e-67 AT1G10740 203 / 1e-65 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Potri.004G029200
[exp]
197 / 2e-61 AT1G10740 188 / 2e-59 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Lus10030585 pacid=23140651 polypeptide=Lus10030585 locus=Lus10030585.g ID=Lus10030585.BGIv1.0 annot-version=v1.0
ATGCCGAGGCGTTGGGCGTCGGCGGCGCTTCAATTGACGGAGCTATTCGTCAGCGCTTTGGTCCACATGCTATACGGATTTTACATATTCAGCTCCGCCG
TCGCCGGCGATCTCTCCCAAACCTTGAGCGATTGGTTCTTCAAGCCAAACATGAACCTCCTCGTCAAAGAACAACAACAATCATTAAACGAGTCATCCTC
CAAGCTCACCAACGTCGAGGACATCCCTCCGATCGTCTTGGTCCACGGCATTTTCGGGTTCGGGAAAGGGCGATTGGGGGGTTTATCCTACTTTGCAGGT
GCAGAGAATAAAGATGAGAGGGTTCTTGTTCCTGATTTGGGATCTCTCACTAGCATCTATGATAGGGCGAGGGAGCTGTTCTATTATTTGAAAGGTGGCC
AGGTTGATTATGGTGAAGAACACAGCAAAGCTTGTGGGCATTCCCAGTTTGGAAGGATATATGAAAAAGGGAACTATGCTGAGTGGGATGAAGATCACCC
TATTCATTTCGTTGGCCATTCTGCCGGAGCTCAGGTTGTTCGAGTTCTGCAGCAAATGCTTGCTGACAAGTCCTTCAAGGGTTATGAGAACACTTCAGAG
AATTGGGTGTTGAGCATTACATCCTTATCAGGTGCTTTCAATGGAACTACCAGAACTTACTTGGATGGAATGCTTCCGGAAGATGGGAAGAGCTTGAGAC
CAATATCTCTGCTCCAAATCTGCCGTCTAGGCGTGATTGTGTACGATTGGCTAGACATACCTTGGCTGAAAGCTTACTACAACTTCGGGTTCGACCACTT
CAACATGTCGTGGAAGAAAATGGGGATCTCCGGTCTGGTGGATTGCCTATTGGGAAATGCCGGTCCATTTGCTCATTCAGGAGACTGGATCCTCCCCGAC
CTAACGATCCAAGGCTCAGTGGAACTCAACCGCCATCTACAAACGTTCCCCAACACGTACTACTTCAGCTACGCAACCAAGCGAACCGCCAAGATCTTTG
GTGGCGTCACTTTGCCTTCGAGCATCTTCGGTATCCATCCCATGCTTTTCATCAGAGTTCTTCAGATGAGCCAGTGGCGACTTCCTTCCGATGTCCCTCC
TCCTTACAAAGGATACCGGGATGAGGATTGGCAGGACAATGATGGAGCTCTCAACACCATATCCATGACACACCCTCGCTTCCCAATCGAGCATCCGAGC
CACTTCATTCAAGACGATTCCCAATGTCGATCCTTGCAGCCCGGGATCTGGTACTACAAGGTGGTGGAAGGAGATCACATACTGTTCATAGTGAACAGAG
AAAGAGCAGGGCTCCAATTCGACTTGATATACGACAGCATTTTCGAACGATGCAGAAAGCATGTGTTCAAGAGGAACCCACAGATGTTGCCAAATGAAGC
ACACCATTAA
AA sequence
>Lus10030585 pacid=23140651 polypeptide=Lus10030585 locus=Lus10030585.g ID=Lus10030585.BGIv1.0 annot-version=v1.0
MPRRWASAALQLTELFVSALVHMLYGFYIFSSAVAGDLSQTLSDWFFKPNMNLLVKEQQQSLNESSSKLTNVEDIPPIVLVHGIFGFGKGRLGGLSYFAG
AENKDERVLVPDLGSLTSIYDRARELFYYLKGGQVDYGEEHSKACGHSQFGRIYEKGNYAEWDEDHPIHFVGHSAGAQVVRVLQQMLADKSFKGYENTSE
NWVLSITSLSGAFNGTTRTYLDGMLPEDGKSLRPISLLQICRLGVIVYDWLDIPWLKAYYNFGFDHFNMSWKKMGISGLVDCLLGNAGPFAHSGDWILPD
LTIQGSVELNRHLQTFPNTYYFSYATKRTAKIFGGVTLPSSIFGIHPMLFIRVLQMSQWRLPSDVPPPYKGYRDEDWQDNDGALNTISMTHPRFPIEHPS
HFIQDDSQCRSLQPGIWYYKVVEGDHILFIVNRERAGLQFDLIYDSIFERCRKHVFKRNPQMLPNEAHH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G10740 alpha/beta-Hydrolases superfam... Lus10030585
[exp]
0 1
AT4G34770 SAUR-like auxin-responsive pro... Lus10012185
[exp]
13.6 0.9559
AT4G16515 RGF6 root meristem growth factor 6,... Lus10008506
[exp]
18.9 0.9558
AT1G08770 PRA1.E prenylated RAB acceptor 1.E (.... Lus10042535
[exp]
21.3 0.8939
AT3G09790 UBQ8 ubiquitin 8 (.1) Lus10022258
[exp]
23.1 0.9554
AT3G28857 bHLH PRE5 Paclobutrazol Resistance 5, ba... Lus10030490
[exp]
25.8 0.9537
AT5G54740 SESA5 seed storage albumin 5 (.1) Lus10023513
[exp]
26.2 0.9554
AT3G24130 Pectin lyase-like superfamily ... Lus10016678
[exp]
33.3 0.9527
AT1G18400 bHLH bHLH044, BEE1 BR enhanced expression 1 (.1) Lus10033562
[exp]
36.4 0.9519
AT4G34760 SAUR-like auxin-responsive pro... Lus10028466
[exp]
38.7 0.9516
AT3G21720 ICL isocitrate lyase (.1) Lus10015122
[exp]
41.4 0.9514

Lus10030585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.