Plant FIBer expression Database

Lus10030586 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10740 325 / 2e-111 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
AT1G23330 307 / 1e-103 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030585
[exp]
431 / 5e-152 AT1G10740 766 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10030904
[exp]
411 / 2e-144 AT1G10740 763 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10013048
[exp]
369 / 6e-128 AT1G10740 779 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10029114
[exp]
368 / 2e-127 AT1G10740 778 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G044400
[exp]
332 / 3e-113 AT1G10740 719 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Potri.008G187900
[exp]
328 / 1e-111 AT1G10740 709 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Potri.016G114350
[exp]
213 / 2e-71 AT1G10740 203 / 1e-65 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Potri.004G029200
[exp]
199 / 2e-65 AT1G10740 188 / 2e-59 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Lus10030586 pacid=23140584 polypeptide=Lus10030586 locus=Lus10030586.g ID=Lus10030586.BGIv1.0 annot-version=v1.0
ATGCCGAGGCGTTGGGCGTCGGCGGCGCTTCAATTGACGGAGCTATTCGTCAGCGCTTTGGTCCACATGCTATACGGATTTTACATATTCAGCTCCGCCG
TCGCCGGCGATCTCTCCCAAACCTTGAGCGATTGGTTCTTCAAGCCAAACATGAACCTCCTCGTCAAAGAACAACAACAATCATTAAACGAGTCATCCTC
CAAGCTCACCAACGTCGAGGACATCCCTCCGATCGTCTTGGTCCACGGCATTTTCGGGTTCGGGAAAGGGCGATTGGGGGGTTTATCCTACTTTGCAGGT
GCAGAGAATAAAGATGAGAGGGTTCTTGTTCCTGATTTGGGATCTCTCACTAGCATCTATGATAGGGCGAGGGAGCTGTTCTATTATTTGAAAGGTGGCC
AGGTTGATTATGGTGAAGAACACAGCAAAGCTTGTGGGCATTCCCAGTTTGGAAGGATATATGAAAAAGGGAACTATGCTGAGTGGGATGAAGATCACCC
TATTCATTTCGTTGGCCATTCTGCCGGAGCTCAGGTTGTTCGAGTTCTGCAGCAAATGCTTGCTGACAAGTCCTTCAAGGGTTATGAGAACACTTCAGAG
AATTGGGTGTTGAGCATTACATCCTTATCAGGTGCTTTCAATGGAACTACCAGAACTTACTTGGATGGAATGCTGTGA
AA sequence
>Lus10030586 pacid=23140584 polypeptide=Lus10030586 locus=Lus10030586.g ID=Lus10030586.BGIv1.0 annot-version=v1.0
MPRRWASAALQLTELFVSALVHMLYGFYIFSSAVAGDLSQTLSDWFFKPNMNLLVKEQQQSLNESSSKLTNVEDIPPIVLVHGIFGFGKGRLGGLSYFAG
AENKDERVLVPDLGSLTSIYDRARELFYYLKGGQVDYGEEHSKACGHSQFGRIYEKGNYAEWDEDHPIHFVGHSAGAQVVRVLQQMLADKSFKGYENTSE
NWVLSITSLSGAFNGTTRTYLDGML

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G10740 alpha/beta-Hydrolases superfam... Lus10030586
[exp]
0 1
AT5G63640 ENTH/VHS/GAT family protein (.... Lus10012506
[exp]
3.9 0.8331
AT5G57970 DNA glycosylase superfamily pr... Lus10038388
[exp]
5.0 0.8438
AT1G67190 F-box/RNI-like superfamily pro... Lus10020611
[exp]
6.2 0.8412
AT2G46780 RNA-binding (RRM/RBD/RNP motif... Lus10030202
[exp]
8.4 0.8232
AT5G28150 Plant protein of unknown funct... Lus10022050
[exp]
11.0 0.8157
AT5G44680 DNA glycosylase superfamily pr... Lus10036248
[exp]
12.6 0.8381
AT2G23970 Class I glutamine amidotransfe... Lus10033793
[exp]
13.7 0.7596
AT5G64330 JK218, RPT3, NP... ROOT PHOTOTROPISM 3, NON-PHOTO... Lus10011290
[exp]
16.2 0.8280
AT5G14180 MPL1 Myzus persicae-induced lipase ... Lus10041571
[exp]
16.7 0.7753
AT3G16240 DELTA-TIP1, ATT... delta tonoplast integral prote... Lus10025808
[exp]
18.3 0.8114

Lus10030586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.