Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 729 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 690 / 0 EFR EF-TU receptor (.1) AT3G47090 685 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 678 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 666 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 439 / 1e-137 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 408 / 2e-124 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G08850 404 / 3e-124 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G17230 400 / 4e-122 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 395 / 3e-120 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030903 [exp] 1292 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 1286 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 1266 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 1238 / 0 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 1221 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 1211 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 1180 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 1179 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 1177 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007866 [exp] 931 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 900 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 898 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 879 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 877 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 875 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 870 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 868 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 851 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 849 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030587 pacid=23140761 polypeptide=Lus10030587 locus=Lus10030587.g ID=Lus10030587.BGIv1.0 annot-version=v1.0 ATGAGTTCAGGGAGTTTGAGTGTACTACTTGTTCAGCTGTTGTTGTTTTGGCGCCATTGTGATGCTTACTCCTCTGGAATTCTGTTGAGTAACGAGACCG ATCGTCTCGCCTTGCTGAGTTTTAAGTCCAGGATCTCTGCTGATCCTTTCGGGGCTTTGAGCTCGTGGAATGATTCTATGCATTTCTGCAAGTGGTATGG TGTGTCTTGTTCCAAAAGACATAATGGTAGAGTCACTGCCTTGAAGTTGACATCCGAAGGACTATCGGGCTCTATCTCACCGCACATTGGCAATCTAAGT TTCTTAAAAGTTCTCCACCTCTACAACAATAGCTTCCTTCGGGGAATACCTCGCGAAATTGGCCGCCTTCGGAGATTGCAGGAGTTGGTGCTCTACAACA ACTCACTTGGTGGTGAGATCCCGTCAAATATTTCAGGATGCTTAGCCCTTACCATGTTCAGGGTAGGTAGAAACAACTTGGTCGGAGGACTGCCATGGCA ATTCGGCGAGTTGAACAAACTCCAACTCTTCATGATAGCAACAAACAATCTCAAGGGAACCATCCCTCCCTCTTTTGGCAACTTGTCATCCCTTCAGGTA TTCGTCGGATCCAGAAACCAATTTAGCGGGAGAATTCCGAATACTCTAGGCCAATTGAAACGCATACAAAAGTTGGGTCTGGACAGTAATAGCTTATCTG GTGAAATTCCTGCTTCCATTTTCAATCTTTCTTCTCTCAGAGAATTGTGGTTTGGAGCAAACGAACTTCATGGCACTCTTCCTTGGAACCTCGGAATATC ATTGCCATATCTTGAGAATTTTGATGTGGGTAGAAATCAGTTCACCGGTAATGTTCCATCTTCCTTATCCAATGCCTCAAATTTGGTTCTACTACAGCTT GGACGAAACAAATTTACAGGAAGCATGCCTAATATGGCAAGCTCTAGCAAGCTCTGGGAAATCAGAATGATTAACAGTTCTCTAGGAAGTGGAAAACCCA ATGATTTGGAGTTCCTTTCTTCCTTGACCAACGCTACAAGTTTGGAATACATAGCGGTGGATGGAAATAATTTTGGAGGAAGCTTACCGCAACATATTGG CAACTTATCAACCAGCCTGAAGCATCTGTCTTTCTCTAACAACAAAGTATCAGGAAACATTCCGAGTGGGATACAATACCTTGTTAATCTGGAGGAGCTT TCTGCATCTAACAATAATCTGTCAGGTACAATTGCATACAGTATCGGAAGACTAAAGTCTTTAGAGCGGTTGCTTTTGTCTAACAACCAATTTTCAGGAT ATATTCCATCTTCTGTGGGAAACTTGACGAAACTGATTGAACTGGACATTAGCACTAACAATCTCCATGGAGAAATTCCTACTTCTATTCGTAGTTGCAA CAAATTATTAGGTTTGAAAATGTCTCGCAACAATCTCAATGGAGTCATCCCACCACAAGTTTTGAGTCTGACCTCCTTATCAATTGTCCTAGACTTGTCT CGCAATCGATTCACGGGCGCCCTTCCTGTCGAGGTGGGAAAGCTGAAGAACTTGGGTATCTTAACTCTATCTCATAATAGGTTGTCAGGCAACATCCCAA GTAGTTTGGGTAGTTGCATCAGCCTGGAGTCTCTATTCTTGCAAGGCAATCACTTACAAGGTGTTATTCCTTCTTCTTTGAGTTCATTAAGAGGTATTCA AGAGATGGATCTTTCTTCCAATAACTTATCGGGCCAAATTCCAACATTTTTAGAGGGTATGAATATTTCAAAATTGTTAAATTTGTCGAATAACAATTTC GATGGTGAAATGCCTGATAGAGGAGTCTTCAAAAACGCCAGCATCATTTCAGTCATTGGAAACAATAAACTCTGCGGGAGAATGGGTGCACTTAAACTTC GACCGTGTAACTTCACGAGACACTCGAACAAAGCATTGAGCTTTAAGTGGAAGATTGTTATATCAACAATATGCGGTTTACTCGTTCTTACCTCTGTTGG TTCTTGCTTCTTTATATTTTTTATTAAAAATAGAGGAAGTCAAGACACTTTTTCAACTCATGATGTGGATTTACCACATCTATCTTATCAAAGACTCTTC AAAGCTACAAATGGTTTCTCTCGAGAAAATCAAATTGGTGTGGGCAGCTTTGGTACGGTCTACAAAGGAGGACTTCTTAATCAAATTGATGAAAGTAGTA TAAATATTGCTGTGAAAGTATTCAACCTTCAACGATATGGAGCTCTCAAGAGTTTTATATCAGAATGTGAAGCGTTGAAAAATATTAGACACAAAAATCT TGTGAGAATAATAACGGTATGCTCAAGTGTTGATCATGAAGGGAATGATTTTAAGGCTCTCATATATGAGTTATCGACTAATGGGAGCTTAGAAGATTGG CTTCATCATCCGATTGAAAGAATAAACGAGTCTGCAACAAGGAGCTTAAAATTCATCGAGATGGTAAATATTGCTATTGATATCGCTTCTGCTATGGATT ATCTTCATGATCATTGTGAAACTTCGATTGTTCATTGTGATCTCAAACCTAGTAATATACTTCTGGATGAGGATATGGTAGCTCATGTTGGTGATTTTGG GTTGGCAAGATTTCTTTCGATAGTTACAAATTCCTCTTCAAATTCCACTGAAATAAAGGGGACGGTCGGTTATACAGCTCCAGAATATGGAATGGGAAAT GAAGTATCGGTACAAGGTGATGTGTACAGTTACGGTGTCCTGCTACTTGAGATGTTCACTGGAAGGAGGCCAACCGATGAGAGTTTTAAAGATGGCGCAA GCCTTCGTAACATTGTCAAAAACGCTTTGTTGAAACAACACACGTTAGGAGTTGTTGATCCAATTCTACTCAACGAACTACTTCGTAAAGCGCACCGCAA CTTTACCACTAGCCGCTCAGATGAAGAGAAAAATGGCTTAGAGGAACTAATGAGTTCCATTTTCGAAATTGGGGTTACTTGTTCCTCAAACATCCCAGAA GAGAGACTTAGTATGAGTGAAGTTTTATCTAAACTTATCGTTATAAAGAAAAAAGAATTGGTCCAGTCGACCGAGAGGTAA
AA sequence Show only first row Show all	>Lus10030587 pacid=23140761 polypeptide=Lus10030587 locus=Lus10030587.g ID=Lus10030587.BGIv1.0 annot-version=v1.0 MSSGSLSVLLVQLLLFWRHCDAYSSGILLSNETDRLALLSFKSRISADPFGALSSWNDSMHFCKWYGVSCSKRHNGRVTALKLTSEGLSGSISPHIGNLS FLKVLHLYNNSFLRGIPREIGRLRRLQELVLYNNSLGGEIPSNISGCLALTMFRVGRNNLVGGLPWQFGELNKLQLFMIATNNLKGTIPPSFGNLSSLQV FVGSRNQFSGRIPNTLGQLKRIQKLGLDSNSLSGEIPASIFNLSSLRELWFGANELHGTLPWNLGISLPYLENFDVGRNQFTGNVPSSLSNASNLVLLQL GRNKFTGSMPNMASSSKLWEIRMINSSLGSGKPNDLEFLSSLTNATSLEYIAVDGNNFGGSLPQHIGNLSTSLKHLSFSNNKVSGNIPSGIQYLVNLEEL SASNNNLSGTIAYSIGRLKSLERLLLSNNQFSGYIPSSVGNLTKLIELDISTNNLHGEIPTSIRSCNKLLGLKMSRNNLNGVIPPQVLSLTSLSIVLDLS RNRFTGALPVEVGKLKNLGILTLSHNRLSGNIPSSLGSCISLESLFLQGNHLQGVIPSSLSSLRGIQEMDLSSNNLSGQIPTFLEGMNISKLLNLSNNNF DGEMPDRGVFKNASIISVIGNNKLCGRMGALKLRPCNFTRHSNKALSFKWKIVISTICGLLVLTSVGSCFFIFFIKNRGSQDTFSTHDVDLPHLSYQRLF KATNGFSRENQIGVGSFGTVYKGGLLNQIDESSINIAVKVFNLQRYGALKSFISECEALKNIRHKNLVRIITVCSSVDHEGNDFKALIYELSTNGSLEDW LHHPIERINESATRSLKFIEMVNIAIDIASAMDYLHDHCETSIVHCDLKPSNILLDEDMVAHVGDFGLARFLSIVTNSSSNSTEIKGTVGYTAPEYGMGN EVSVQGDVYSYGVLLLEMFTGRRPTDESFKDGASLRNIVKNALLKQHTLGVVDPILLNELLRKAHRNFTTSRSDEEKNGLEELMSSIFEIGVTCSSNIPE ERLSMSEVLSKLIVIKKKELVQSTER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10030587 [exp]	0	1
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10032345 [exp]	7.2	0.6912
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10032798 [exp]	10.3	0.7268
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Lus10016563 [exp]	16.1	0.6771
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10038912 [exp]	17.7	0.7024
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10027196 [exp]	18.7	0.7080
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10033678 [exp]	22.2	0.6867
					Lus10003753 [exp]	23.5	0.6729
AT4G20040			Pectin lyase-like superfamily ...		Lus10008700 [exp]	24.6	0.6729
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000682 [exp]	25.7	0.6729
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10032339 [exp]	26.7	0.6729

Compare expression of checked genes

Lus10030587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.