Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12940 631 / 0 ATNRT2.5 nitrate transporter2.5 (.1) AT5G60770 530 / 0 ATNRT2.4 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) AT1G08090 527 / 0 LIN1, ACH1, NRT2;1AT, ATNRT2:1 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) AT5G60780 520 / 0 ATNRT2.3 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.3, nitrate transporter 2.3 (.1) AT3G45060 518 / 0 ATNRT2.6 ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6, high affinity nitrate transporter 2.6 (.1) AT1G08100 510 / 6e-178 NRT2;2AT, ACH2, ATNRT2.2 nitrate transporter 2.2 (.1) AT5G14570 410 / 4e-139 ATNRT2.7 high affinity nitrate transporter 2.7 (.1) AT4G14358 47 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030902 [exp] 844 / 0 AT1G12940 751 / 0.0 nitrate transporter2.5 (.1) Lus10013042 [exp] 598 / 0 AT1G12940 635 / 0.0 nitrate transporter2.5 (.1) Lus10026527 [exp] 494 / 1e-171 AT5G60770 759 / 0.0 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) Lus10016121 [exp] 388 / 2e-131 AT1G08090 583 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Lus10016120 [exp] 326 / 3e-108 AT1G08090 533 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Lus10008767 [exp] 316 / 5e-103 AT5G14570 483 / 1e-168 high affinity nitrate transporter 2.7 (.1) Lus10021444 [exp] 209 / 1e-63 AT5G60770 307 / 1e-101 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) Lus10025421 [exp] 163 / 1e-47 ND 193 / 1e-59 Lus10016119 [exp] 150 / 3e-43 AT5G60770 177 / 4e-54 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124708 [exp] 731 / 0 AT1G12940 684 / 0.0 nitrate transporter2.5 (.1) Potri.T124608 [exp] 729 / 0 AT1G12940 688 / 0.0 nitrate transporter2.5 (.1) Potri.015G081300 [exp] 726 / 0 AT1G12940 698 / 0.0 nitrate transporter2.5 (.1) Potri.012G087700 [exp] 679 / 0 AT1G12940 640 / 0.0 nitrate transporter2.5 (.1) Potri.009G008500 [exp] 543 / 0 AT1G08090 830 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Potri.009G008600 [exp] 542 / 0 AT1G08090 832 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Potri.001G348300 [exp] 483 / 3e-168 AT5G14570 509 / 1e-178 high affinity nitrate transporter 2.7 (.1) Potri.004G213716 [exp] 86 / 2e-20 AT1G08090 105 / 1e-28 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10030588 pacid=23140642 polypeptide=Lus10030588 locus=Lus10030588.g ID=Lus10030588.BGIv1.0 annot-version=v1.0 ATGGAAATGGAACCTGATTCACCTGCGACGACGGCCAAATTTGCTATGCCGGTCGACTCGGAGCACAAATCCACGAAATTTGTAGTCTATTCATTTGCGG CTCCGCACATGAGAGCCTTCCATCTCTCGTGGGTGTCGTTCTTTGCATGCTTTGTCTCCACGTTCGCCGCCCCTCCTCTGCTTCCGATCATCCGCGACAA CCTCAACCTGACGGCTTCTGACATTGGAAACGCCGGCATTGCTTCTGTATCTGGCGCTGTTTTCGCTCGTGTGGCGATGGGAACTGCATGTGATATGTTC GGGCCTCGTCTTGCCTCGGCGACGCTTACTTTGCTCACTGCTCCTGCCGTCTACTTCACCCCTATGGCTTCCTCCCCTGCTTCCTTCCTCCTCGTCAGGT TCTTCACCGGTTTCTCTCTGGCGACATTCGTCTCGACGCAGTACTGGATGAGCTCGATGTTCTCCCCTCCGGTGGTTGGAACCGCCAACGGGGTTGCCGG GGGGTGGGGAAACCTCGGTGGAGGCGCAACCCAGCTCATAATGCCGCTCGTCTTCGGCCTAATCCGAGATATCGGAGCCACGAAATTCACCGCCTGGCGA ATCGCGTTCTTCATCCCCGCTTTGTTCCAAACCCTGTGCGCATTCGCCGTCTTGATGTTCGGCCAGGACCTCCCCGACGGGAACTTCCGCCGCCTCGAAT CCTCCGGCGACAAGCCCAAGGACAAGTTCGCCGACGTCCTCCGCCACGGATTCACCAACTACAGAGGCTGGATCCTGGCCCTGACGTACGGGTACTGCTT CGGAGTCGAACTGACAATGGACAACGTGATTGCCGAGTATTTCTACGACCGGTTCAATTTGAAGCTCCACACGGCCGGGATCATTGCGGCCAGCTTTGGT TTGGCAAATCTGGTGTCGAGACCCGGCGGTGGGATTCTCTCCGATGTGGTGGCGAAGAGGTTCGGGATGAGAGGACGGCTTTGGACGCTTTGGATTGTAC AGACCGTGGGTGGGGTTCTTTGTGTAGCGCTTGGTTTAGTTGATTCCTTGGCTGGCTCCATTGTTGTTATGATATGCTTTTCCTTGTTCTGCCAAGCTGC TTGTGGACTCACTTTCGGCGTCGTTCCTTTCGTGTCGAGGAGGTCGTTAGGCTTAATCTCAGGGATGACAGGAGGAGGAGGCAACGTGGGAGCAGTGTTG ACTCAGTTGATCTTCTTCAGAGGCTCAAGATACTCCAAGGAGAAAGGAATCATGTTGATGGGAGTCATGATCATATGCTGCAGTCTGCCAATAACTTTGA TACGCTTCCCACAGTGGGGAGGGATGTTCCGTGGGCCATCGAGCAAAGTTGCGACTGAAGAGGATTACTACATGGCGGAATGGAGCTCGGCAGAGAAGCA GAGAGGGTTGCATCAGGCTAGCATCAAGTTTGCGGACAACAGCAGGGGGGAACGTGGTCGGAGATTGGGTCCCGGTACTGTCCCTGCTGCTGCTAATGGA TCGTAG
AA sequence Show only first row Show all	>Lus10030588 pacid=23140642 polypeptide=Lus10030588 locus=Lus10030588.g ID=Lus10030588.BGIv1.0 annot-version=v1.0 MEMEPDSPATTAKFAMPVDSEHKSTKFVVYSFAAPHMRAFHLSWVSFFACFVSTFAAPPLLPIIRDNLNLTASDIGNAGIASVSGAVFARVAMGTACDMF GPRLASATLTLLTAPAVYFTPMASSPASFLLVRFFTGFSLATFVSTQYWMSSMFSPPVVGTANGVAGGWGNLGGGATQLIMPLVFGLIRDIGATKFTAWR IAFFIPALFQTLCAFAVLMFGQDLPDGNFRRLESSGDKPKDKFADVLRHGFTNYRGWILALTYGYCFGVELTMDNVIAEYFYDRFNLKLHTAGIIAASFG LANLVSRPGGGILSDVVAKRFGMRGRLWTLWIVQTVGGVLCVALGLVDSLAGSIVVMICFSLFCQAACGLTFGVVPFVSRRSLGLISGMTGGGGNVGAVL TQLIFFRGSRYSKEKGIMLMGVMIICCSLPITLIRFPQWGGMFRGPSSKVATEEDYYMAEWSSAEKQRGLHQASIKFADNSRGERGRRLGPGTVPAAANG S

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12940		ATNRT2.5	nitrate transporter2.5 (.1)		Lus10030588 [exp]	0	1
AT1G67623			F-box family protein (.1)		Lus10038709 [exp]	4.0	0.7147
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10005204 [exp]	7.1	0.6843
AT3G17090			Protein phosphatase 2C family ...		Lus10017061 [exp]	17.0	0.6266
AT2G23200			Protein kinase superfamily pro...		Lus10010443 [exp]	24.7	0.6003
					Lus10005752 [exp]	31.6	0.6436
					Lus10021618 [exp]	33.3	0.6805
AT4G30660			Low temperature and salt respo...		Lus10036592 [exp]	34.0	0.6225
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009018 [exp]	47.4	0.6151
AT1G56300			Chaperone DnaJ-domain superfam...		Lus10020685 [exp]	50.0	0.5999
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10012000 [exp]	72.0	0.5934

Compare expression of checked genes

Lus10030588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.