Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70520 805 / 0 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT1G70530 474 / 9e-160 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT5G40380 471 / 1e-158 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) AT4G28670 444 / 3e-148 Protein kinase family protein with domain of unknown function (DUF26) (.1) AT1G19090 376 / 3e-122 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) AT4G23180 320 / 6e-100 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G38830 313 / 2e-97 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G21230 308 / 1e-95 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT4G23230 298 / 3e-93 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT1G61610 302 / 1e-91 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030901 [exp] 1154 / 0 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10029123 [exp] 1003 / 0 AT1G70520 822 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10013039 [exp] 833 / 0 AT1G70520 699 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10029122 [exp] 462 / 8e-155 AT1G70530 789 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10013040 [exp] 450 / 3e-150 AT1G70530 788 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10010960 [exp] 341 / 6e-109 AT1G70520 373 / 2e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10008764 [exp] 315 / 2e-101 AT5G40380 426 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Lus10018382 [exp] 320 / 1e-99 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10018379 [exp] 318 / 8e-99 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G043800 [exp] 913 / 0 AT1G70520 805 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.010G043700 [exp] 899 / 0 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.007G056000 [exp] 509 / 1e-173 AT4G28670 579 / 0.0 Protein kinase family protein with domain of unknown function (DUF26) (.1) Potri.010G043900 [exp] 474 / 1e-159 AT1G70530 805 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Potri.012G087000 [exp] 474 / 5e-159 AT5G40380 567 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.001G348000 [exp] 471 / 2e-158 AT5G40380 729 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.017G141400 [exp] 397 / 1e-129 AT5G40380 390 / 6e-127 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.017G141300 [exp] 382 / 5e-123 AT5G40380 382 / 4e-123 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.001G276600 [exp] 374 / 4e-121 AT1G70520 373 / 8e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.004G025900 [exp] 332 / 1e-104 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10030589 pacid=23140694 polypeptide=Lus10030589 locus=Lus10030589.g ID=Lus10030589.BGIv1.0 annot-version=v1.0 ATGCTCTGTTTCAAGATCGAACCAGAAACAGAGCAACCACAAAGAATGAGGAGCAAAACAGAGCTCATCATCTTCTTCTTTCTGGCCGCAACGCTCGAGC AACAAACAGCAAACGGAGACGCCAGAGCACAGACGGTCAACGTTACCTGCAACAATCAACTGGAGGAGAACGGGACAATTTACGTGCCCAATTTCGTCGC GACGATGGAGAACATCAGCGACCAGATGAGAACCTCAGGGTTCGGAGCAGCAGTAGCAGGGGATCCAGGGCCTAACAGGAACTACGGCCTGGCGCAATGC TACGGAGACCTGTCGTTGCTCGACTGCGTCCTCTGCTATGCTGAGGCACGCACCATCCTGCCGCAGTGCTATCCTTACAATGGCGGGAGGATCTTCCTCG ACGGCTGCTTCATGAGGGCCGAGAACTACAGCTTCTACGGCGAGTACTCCGGCCCTCAGGACAGAGTTATTTGCAGCGGGGGCGGTGGAAATAATGCAAC GACGTCGTTTCAGGATTCGGTGAGACGAGCGCTGTCGAATGCGGTGGGGAATGCGCCGGGCAACGGCGGGTATTCCAGGATGAGGGAGGCGGTTTTCGGG GAAGCGAATAATGGTTCGTCTTTGTCGGTTTTCGTGCTGGCAAATTGCTGGAGGAATTTGAATTCCAGTGCCTGCAGGTTGTGTTTGGAGAATGCTAAGG AGTCCTTGGTTAGTTGCTTGCCTAGTACGGAAGGGAGGGCTTTGAATACAGGGTGTTTTGTTAGGTATTCAGATAGGGATTTCCTCAACAGCGAGTCCGG AAATCGAAGTTCCAGAGTTCCTGTTGCTGTGATAGTTGTTTCAGTTGTCAGCTGTGTTCTGGTTCTGCTAGTTGGTGGAGCAATTGGAGGCTTTATATGG AGAAACAAATACATTGAGAAGAAAAGAAGAGGTCCTAACGATGTGCGCAAGTTGGTGAAAATCCTGAACGACAGCAGCTTGAACTTCAAGTATTCGACAC TCGAGAAGGCTACAGGATGCTTCGACGAAGCCAACAAGCTTGGACAAGGAGGGTTCGGGTCGGTTTACAAGGGAGTTCTGCCGGATGGAAGAGAGATAGC TGTGAAGAGGCTGTTCATCAACAACAAGCACAGAGTAGCAGATTTCTTCAATGAAGTCAACATGATCAGCAGTGTTGAACATAAGAACCTTGTCAGGTTG TTGGGTTGCAGCTGTTCCGGTCCCGAAAGCCTCCTCGTCTACGAATTCCTGCCCAACCGGAGCCTCGATCGCTACATATTTGATGCAAACAAGGGGAAGG CAATGAGCTGGGACAAGAGGTACGAGGTAATTGTGGGAACAGCAGAAGGTTTAGTGTACCTTCATGAGAATTCCAAGATCAGGATCATCCACAGGGACAT TAAGGCCAGTAACATCCTGCTGGATTCGAGACTTCGAACTAAGATTGCCGATTTTGGATTGGCTAGGTCTTTCCAGGGGGATAAGAGTCATATAAGCACA GTCATTGCAGGAACCCTAGGGTATATGGCTCCGGAATATCTGGCACACGGCCAGTTGACGGAGAAGGCAGATGTTTACAGCTTTGGAGTACTTGTGCTAG AAATTGTTACTGGGAAGGAGAACAACAGAAGCAAATCCTCTGAATATACAGACAGCCTAGTCAACTTGATGTGGGTGCGATTCCATACGGGAAATCTCGA AGAGATGTACGATCCGAACCTGACATTGCATAACCACTACAACTGCAACGTCAGGAACGACGTTCTGCGAGTCGTCCACGTGGCGCTTCTGTGCACACAG GAGAGTCCAGCTCTAAGACCAGTCATGTCCAAGGTGCTCCAGATGCTAACCACAGAAGAGCAGCTCCCTCCTCCGACGAATCCTCCGTTCGCCGACGAGA AGACCATGGAAATGGGGGATAAAGATCCATTGGCCCTCAATGTTGGCAGTTTGGAATCAGTTGCTACTGTTGATCACAGTTCTTTCCATCCAAGATGA
AA sequence Show only first row Show all	>Lus10030589 pacid=23140694 polypeptide=Lus10030589 locus=Lus10030589.g ID=Lus10030589.BGIv1.0 annot-version=v1.0 MLCFKIEPETEQPQRMRSKTELIIFFFLAATLEQQTANGDARAQTVNVTCNNQLEENGTIYVPNFVATMENISDQMRTSGFGAAVAGDPGPNRNYGLAQC YGDLSLLDCVLCYAEARTILPQCYPYNGGRIFLDGCFMRAENYSFYGEYSGPQDRVICSGGGGNNATTSFQDSVRRALSNAVGNAPGNGGYSRMREAVFG EANNGSSLSVFVLANCWRNLNSSACRLCLENAKESLVSCLPSTEGRALNTGCFVRYSDRDFLNSESGNRSSRVPVAVIVVSVVSCVLVLLVGGAIGGFIW RNKYIEKKRRGPNDVRKLVKILNDSSLNFKYSTLEKATGCFDEANKLGQGGFGSVYKGVLPDGREIAVKRLFINNKHRVADFFNEVNMISSVEHKNLVRL LGCSCSGPESLLVYEFLPNRSLDRYIFDANKGKAMSWDKRYEVIVGTAEGLVYLHENSKIRIIHRDIKASNILLDSRLRTKIADFGLARSFQGDKSHIST VIAGTLGYMAPEYLAHGQLTEKADVYSFGVLVLEIVTGKENNRSKSSEYTDSLVNLMWVRFHTGNLEEMYDPNLTLHNHYNCNVRNDVLRVVHVALLCTQ ESPALRPVMSKVLQMLTTEEQLPPPTNPPFADEKTMEMGDKDPLALNVGSLESVATVDHSSFHPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030589 [exp]	0	1
AT3G11920			glutaredoxin-related (.1)		Lus10030563 [exp]	1.0	0.9897
AT5G59100			Subtilisin-like serine endopep...		Lus10004686 [exp]	1.4	0.9897
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10040509 [exp]	1.7	0.9881
AT1G11300			protein serine/threonine kinas...		Lus10023391 [exp]	2.8	0.9880
AT5G01750			Protein of unknown function (D...		Lus10025253 [exp]	3.0	0.9823
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10031388 [exp]	3.2	0.9857
AT5G10530			Concanavalin A-like lectin pro...		Lus10020456 [exp]	3.7	0.9847
AT5G57510			unknown protein		Lus10028472 [exp]	4.5	0.9812
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	6.9	0.9801
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10028679 [exp]	8.2	0.9676

Compare expression of checked genes

Lus10030589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.