Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60800 927 / 0 NIK3 NSP-interacting kinase 3 (.1) AT3G25560 795 / 0 NIK2 NSP-interacting kinase 2 (.1.2.3) AT5G16000 769 / 0 NIK1 NSP-interacting kinase 1 (.1) AT2G23950 702 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G30520 675 / 0 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) AT5G45780 630 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G71830 596 / 0 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT4G33430 579 / 0 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 568 / 0 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT1G34210 530 / 0 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030898 [exp] 1249 / 0 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10034350 [exp] 786 / 0 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10034413 [exp] 782 / 0 AT5G16000 937 / 0.0 NSP-interacting kinase 1 (.1) Lus10019145 [exp] 781 / 0 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10005103 [exp] 777 / 0 AT5G16000 998 / 0.0 NSP-interacting kinase 1 (.1) Lus10019963 [exp] 702 / 0 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015484 [exp] 699 / 0 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007292 [exp] 617 / 0 AT5G45780 801 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020962 [exp] 579 / 0 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G043200 [exp] 1027 / 0 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1) Potri.008G188800 [exp] 1013 / 0 AT1G60800 930 / 0.0 NSP-interacting kinase 3 (.1) Potri.004G108200 [exp] 807 / 0 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.008G110300 [exp] 806 / 0 AT3G25560 918 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.017G108000 [exp] 802 / 0 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.010G134100 [exp] 789 / 0 AT3G25560 927 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.006G179400 [exp] 709 / 0 AT2G23950 889 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G101300 [exp] 684 / 0 AT4G30520 837 / 0.0 SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) Potri.004G059100 [exp] 657 / 0 AT5G45780 837 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G068700 [exp] 656 / 0 AT5G45780 819 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030591 pacid=23140760 polypeptide=Lus10030591 locus=Lus10030591.g ID=Lus10030591.BGIv1.0 annot-version=v1.0 ATGGAAGGGGGGAAGAGTTTCAGGATTTGGGAGTTTGGGTTACTGGTTTTGGCAGTAATGGAGATATGCTCTGCTACTCTTTCTCCTAGTGGTATTAACT ACGAAGTGGTGGCTTTGGTGGCAATAAGGAATGCTTTACACGACCCATACAATGTTCTGGACAATTGGGATGCTAATTCTGTGGATCCTTGTAGCTGGAG GATGATTACTTGCTCATCAGATGGATATGTTTCTGCTCTGGGACTCCCCAGTCAGAGCTTGTCTGGAACTTTATCACCTTCCATTGGCAACCTTACTAAC TTGCAATCGGTGTTGCTGCAAAACAATGCTATCTCAGGACCTATTCCTGGCTCAATTGGGAAACTGGAGAAGCTTCAGACTCTCGATCTTTCCAACAACT CGTTCTACGGAGAGATTCCTGCTTCTTTAGGGGATCTCAAGATGCTGAATTACCTGCGCTTAAACAACAACAGCCTTACTGGACCTTGCCCTCAGTCTCT TTCCAATATTCAAGCCCTTGTGGATCTCTCCTTCAACAATTTGAGTGGTTCACTGCCCAAAATATCAGCAAGAACTTTCAAAGTCATAGGCAATCCTCTA CTGTGTGGACTTAAGGATGCTAACAACTGTTCTGCTGTATTTCCAGAACCCCTCTCTCTCCCTCCTGAAGCAGATTCAGATTCTAAAACAAAGAGTCACC ATGTAGCCATTGCTTTTGGTGCAAGCTTTGGTGCTGCATTCGCCATCATTCTGATCGTAGGTTTCCTTATTTGGTGGAGATATAGGCATAACAAGCAAAT TTTCTTCGATGTGAATGAGCAATATGATCCTGAAGTGAGGCTAGGCCATTTGAGAAGATACACCTTCAAGGAGCTTAGAAACGCGACCGATCACTTCAAC GCCAAGAACATACTAGGGAAAGGCGGGTTCGGAATCGTGTACAAAGGATGTCTGAACGATGGGAGCATAGTGGCTGTGAAAAGGCTGAAAGATTACAATG CAGTAGGTGGTGAAATCCAGTTCCAAACCGAAGTAGAGACCATTAGCTTGGCTGTCCATCGCAACCTCCTTAGGCTATCAGGTTTCTGCACGACCGAGAA CGAACGTATTCTTGTCTATCCTTATATGTCGAATGGCAGTGTTGCATCTCGATTAAAAGATTATATCCATGGAAGGCCAGCTCTTGATTGGGGAAGGAGG AAGAAAATAGCTTTGGGGACAGCTAGAGGTTTACTTTACCTACATGAACAATGCGACCCGAAAATCATTCACAGGGACGTTAAGGCAGCCAACATATTGT TGGATGAAGACTTCGAGGCAGTTGTCGGAGATTTCGGGCTAGCAAAGCTGTTAGACCACAGGGATTCTCACGTTACCACAGCTGTACGTGGCACCGTTGG CCACATTGCACCGGAATACTTGTCGACTGGCCAGTCGTCAGAGAAGACTGACGTTTTCGGTTTTGGTATCCTCCTCCTTGAACTAATCACGGGACAGAAG GCACTCGATTTCGGAAGGGCAGCACACCAGAAAGGTGTTATGCTTGACTGGGTTAAGAAGCTTCACCAGGAAGGAAAGCTACAGCTAATGGTGGACAAAG TGCTGAGAGGGAATCTGGACAGGGTGGAAGTGGAAGAGATGGTCCAGGTGGCACTGTTGTGCACACAGTTCAACCCTATCCACAGGCCGAAAATGGCCGA GGTGTTGAAGATGTTGGAAGGGGATGGGTTGGCTGAGAAATGGGAGGCATCTCAGGACCACTTGGAAACCCCAAGGTTCATCAGAACAAGTGATTACTCG CTCCCTATTCAGAGATATTCAGACTACATTGACGAGTCCTCGCTTGCGGTCGAAGCAATGGAGCTGTCCGGTCCTCGATGA
AA sequence Show only first row Show all	>Lus10030591 pacid=23140760 polypeptide=Lus10030591 locus=Lus10030591.g ID=Lus10030591.BGIv1.0 annot-version=v1.0 MEGGKSFRIWEFGLLVLAVMEICSATLSPSGINYEVVALVAIRNALHDPYNVLDNWDANSVDPCSWRMITCSSDGYVSALGLPSQSLSGTLSPSIGNLTN LQSVLLQNNAISGPIPGSIGKLEKLQTLDLSNNSFYGEIPASLGDLKMLNYLRLNNNSLTGPCPQSLSNIQALVDLSFNNLSGSLPKISARTFKVIGNPL LCGLKDANNCSAVFPEPLSLPPEADSDSKTKSHHVAIAFGASFGAAFAIILIVGFLIWWRYRHNKQIFFDVNEQYDPEVRLGHLRRYTFKELRNATDHFN AKNILGKGGFGIVYKGCLNDGSIVAVKRLKDYNAVGGEIQFQTEVETISLAVHRNLLRLSGFCTTENERILVYPYMSNGSVASRLKDYIHGRPALDWGRR KKIALGTARGLLYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQK ALDFGRAAHQKGVMLDWVKKLHQEGKLQLMVDKVLRGNLDRVEVEEMVQVALLCTQFNPIHRPKMAEVLKMLEGDGLAEKWEASQDHLETPRFIRTSDYS LPIQRYSDYIDESSLAVEAMELSGPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Lus10030591 [exp]	0	1
					Lus10008068 [exp]	2.0	0.8042
AT3G63240			DNAse I-like superfamily prote...		Lus10022074 [exp]	5.5	0.7613
AT2G32280			Protein of unknown function (D...		Lus10038567 [exp]	7.5	0.7535
AT4G03415			Protein phosphatase 2C family ...		Lus10018570 [exp]	10.4	0.7694
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10001377 [exp]	12.8	0.7798
AT2G01275			RING/FYVE/PHD zinc finger supe...		Lus10004058 [exp]	14.7	0.7376
AT2G38900			Serine protease inhibitor, pot...		Lus10035626 [exp]	15.7	0.8089
AT2G36970			UDP-Glycosyltransferase superf...		Lus10016127 [exp]	17.3	0.8011
AT1G53600			Tetratricopeptide repeat (TPR)...		Lus10042208 [exp]	22.8	0.7434
AT1G27070			5'-AMP-activated protein kinas...		Lus10030802 [exp]	27.6	0.7009

Compare expression of checked genes

Lus10030591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.