Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05670 352 / 7e-122 signal recognition particle binding (.1.2) AT2G18770 335 / 4e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G67560 50 / 2e-07 ATARLA1D ADP-ribosylation factor-like A1D (.1) AT3G49870 49 / 9e-07 ATARLA1C ADP-ribosylation factor-like A1C (.1) AT3G49860 47 / 5e-06 ATARLA1B ADP-ribosylation factor-like A1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030896 [exp] 553 / 0 AT5G05670 350 / 1e-122 signal recognition particle binding (.1.2) Lus10029130 [exp] 488 / 3e-175 AT5G05670 368 / 2e-129 signal recognition particle binding (.1.2) Lus10013031 [exp] 461 / 7e-165 AT5G05670 357 / 2e-125 signal recognition particle binding (.1.2) Lus10013024 [exp] 249 / 4e-80 AT2G18770 223 / 2e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019259 [exp] 50 / 6e-07 AT3G49870 355 / 5e-127 ADP-ribosylation factor-like A1C (.1) Lus10025201 [exp] 47 / 6e-06 AT3G49870 353 / 1e-126 ADP-ribosylation factor-like A1C (.1) Lus10011545 [exp] 39 / 0.0009 AT3G49870 243 / 9e-84 ADP-ribosylation factor-like A1C (.1) Lus10035102 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G020900 [exp] 392 / 1e-137 AT5G05670 388 / 6e-138 signal recognition particle binding (.1.2) Potri.009G001600 [exp] 209 / 4e-67 AT5G05670 206 / 2e-67 signal recognition particle binding (.1.2) Potri.001G293100 [exp] 54 / 2e-08 AT3G49870 348 / 1e-124 ADP-ribosylation factor-like A1C (.1) Potri.009G087400 [exp] 53 / 4e-08 AT3G49870 349 / 5e-125 ADP-ribosylation factor-like A1C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF09439 [flax] [poplar] SRPRB Signal recognition particle receptor beta subunit
Representative CDS sequence Show only first row Show all	>Lus10030593 pacid=23140732 polypeptide=Lus10030593 locus=Lus10030593.g ID=Lus10030593.BGIv1.0 annot-version=v1.0 ATGGGAGTTTGTACAATCATTAGCGCGGAGATGCGAGGTGTTCTTGATGGTTTGGAGATCGTTTGGAGGCGAGGATATCGGAAGATCGGAACTCCTCTCT GTCAGTCCAAAACGCAGACTCCTCTCCGATTCACCGGCGACCTCGGAGGTGTCTCGCTCTGTGTCTCGTCTCCTCTCGCCGGAGTCTTCATAGCTGCGTG TTTAATCACTCTATCGATGGAAGGAATTGAGCAGTGGAAGAGGGAGGCGGAGCAATGGATTCAGCAGGGAATCGATTACGTTAGTCATGTGTCGGCAATT CAGAAAGGGATCGAATACGTCAGTCAGGCACCGGGAATTCAGCAAGGGATTGAGTACGCTCGTCAGATACCGCCTGTTCAGCTCTACTCCGCTGCAGCCG TGCTGTTTTACCCTATTCTTATGTTGATTCTAAGTCGCTTGTTCAAACGCTCAAGGTCTAACACCATTGTCTTGTCTGGACTTAGCGGGAGTGGAAAAAC AGTTCTTTTCTATCAGCTTCGGGATGGCTCTTCACATCAAGGTGCTGTGACCTCAATGGAACCAAACGAAGGAACTTTCAGTCTCCATTCTGAAGCTGGC AAGGAACGCAAGGTGAAACAGATCCACATTCTTGATGTTCCTGGGCATCCTCGTCTCCGCCCAAAGCTAGACGAGTTCTTGCCTCAAGCAGCTGGCGTTG TCTTTCTTGTTGATGCTCTAGAGTTCTTACCTAACCTCCGTGCAGTTTCAGAATACCTGTATGATATTTTGACTAAAGCAAGTGTGGTAAGCAAGAAGGT TCCAGTTTTGATTTGCTGCAACAAAACGGAGAAGGTGACAGCACATACCAAGGAGTTCATCTGCAAGCAACTCGAAAAAGAGATTGACAAGCTACGAGAA TCGAGAAGCAGCCTTTCGGATGCTGACATGGCAAATGACCATACCCTTGGTTTATCCGGGAAGCCATTTTCATTCTCTCAGTGCACTAACAATGTCTCGG TCGGGGAAGCTTCCGGTTTGACCGGTAAAATCGCCGATGTTGAACGGTTCATCAGGGAAAATGTAAAACCTTAG
AA sequence Show only first row Show all	>Lus10030593 pacid=23140732 polypeptide=Lus10030593 locus=Lus10030593.g ID=Lus10030593.BGIv1.0 annot-version=v1.0 MGVCTIISAEMRGVLDGLEIVWRRGYRKIGTPLCQSKTQTPLRFTGDLGGVSLCVSSPLAGVFIAACLITLSMEGIEQWKREAEQWIQQGIDYVSHVSAI QKGIEYVSQAPGIQQGIEYARQIPPVQLYSAAAVLFYPILMLILSRLFKRSRSNTIVLSGLSGSGKTVLFYQLRDGSSHQGAVTSMEPNEGTFSLHSEAG KERKVKQIHILDVPGHPRLRPKLDEFLPQAAGVVFLVDALEFLPNLRAVSEYLYDILTKASVVSKKVPVLICCNKTEKVTAHTKEFICKQLEKEIDKLRE SRSSLSDADMANDHTLGLSGKPFSFSQCTNNVSVGEASGLTGKIADVERFIRENVKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05670			signal recognition particle bi...		Lus10030593 [exp]	0	1
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Lus10020357 [exp]	2.0	0.7616
AT2G30942			Protein of unknown function (D...		Lus10007167 [exp]	4.6	0.7651
AT4G30660			Low temperature and salt respo...		Lus10036592 [exp]	6.3	0.7398
AT1G67623			F-box family protein (.1)		Lus10038709 [exp]	6.9	0.7494
AT1G04280			P-loop containing nucleoside t...		Lus10022217 [exp]	7.0	0.7458
AT5G10460			Haloacid dehalogenase-like hyd...		Lus10005305 [exp]	8.9	0.7499
AT1G72175			RING/U-box protein with domain...		Lus10009529 [exp]	16.8	0.7537
AT3G25570			Adenosylmethionine decarboxyla...		Lus10034412 [exp]	17.9	0.7406
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009018 [exp]	19.7	0.6876
					Lus10003592 [exp]	20.5	0.7327

Compare expression of checked genes

Lus10030593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.