Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70505 245 / 6e-80 unknown protein AT1G10660 226 / 7e-73 unknown protein AT5G62960 211 / 2e-66 unknown protein AT3G27770 154 / 1e-44 unknown protein AT2G47115 103 / 6e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030895 [exp] 493 / 1e-178 AT1G70505 256 / 6e-84 unknown protein Lus10029133 [exp] 281 / 4e-93 AT1G10660 338 / 5e-115 unknown protein Lus10027692 [exp] 190 / 9e-59 AT5G62960 355 / 2e-122 unknown protein Lus10002386 [exp] 186 / 2e-57 AT5G62960 320 / 5e-109 unknown protein Lus10042109 [exp] 186 / 9e-57 AT5G62960 397 / 1e-138 unknown protein Lus10014556 [exp] 180 / 2e-54 AT5G62960 305 / 3e-102 unknown protein Lus10032130 [exp] 177 / 2e-53 AT5G62960 303 / 2e-101 unknown protein Lus10013029 [exp] 165 / 4e-46 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10038056 [exp] 141 / 8e-40 AT1G10660 252 / 1e-82 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G042600 [exp] 292 / 2e-98 AT1G10660 372 / 1e-129 unknown protein Potri.012G082400 [exp] 232 / 1e-74 AT5G62960 387 / 1e-134 unknown protein Potri.015G078200 [exp] 231 / 3e-74 AT5G62960 382 / 8e-133 unknown protein Potri.001G347400 [exp] 186 / 5e-57 AT3G27770 314 / 9e-107 unknown protein Potri.002G190200 [exp] 136 / 6e-38 AT2G47115 344 / 1e-118 unknown protein Potri.014G115200 [exp] 132 / 2e-36 AT2G47115 340 / 4e-117 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030594 pacid=23140580 polypeptide=Lus10030594 locus=Lus10030594.g ID=Lus10030594.BGIv1.0 annot-version=v1.0 ATGTTGACTTTGTTAGCAGGATCATCGAACCGGACTTGGCAGCCCACCATGACAGCCGATACGACTGAGCCAAGCTATTGGTTGAACTGGAGGTTCGCCA TTTGTGGAGTTTTCATTGCAGTAATCATGGTTCTATCAGCTCTTGTGATATGGAAGTATGAAGGGTCCAAGGAATCGGAATTCGAATCCGAAGAAAGAAA AGAAAGCCACCGGCAACAAAGTGTTGGATCCTTATATAAGGATGAAGCTTGGAAAACTTGTATGAAGACAATTCATCCTGTTTGGTTGCTAGGTTTTAGG ATTGTTGCCTTTGTTATCCTCTTCTGTTTGCTCACCACGAATACCGTTGTTGATGGAGGAGGCATCTTCTTCTTCTATACTCAGTGGACATTCTCTTTGG TGACCATTTATTTCGGATATGGATCAGCAATGTCGATTTACGGATGTTGCAAAGGTCATGATGCTTCGGCTTTGGATACTGAGAGAGGTAACTACATTGC TCCGTATCTTGGAGAATTTGGAGATTCATCCAACCGTGTAAAGAGTGCAGTTTTGGATCAAGAACAAGATCCGTGCCCTGAGCAAAAGAAAATTGCTGCT GCATGGGGATACGTCTTTCAAATCATCTTCCAGACTTGTGCAGGAGCTGTAGTGCTCACTGATACTGTATTCTGGTTCATTCTTTATCCCTTCCTAATGG CTGCAGATTTCAAGCTCGATTTCATAAATATTTGTATGCATTCAGTCAATGCGATTTTCCTCCTTGGCGACACGATATTGAACGGGATGGTACCTTGGAG TGGGAGTGATGCATATTCCTTGTTACGGGATCTTTGCTCTTATAGTTAG
AA sequence Show only first row Show all	>Lus10030594 pacid=23140580 polypeptide=Lus10030594 locus=Lus10030594.g ID=Lus10030594.BGIv1.0 annot-version=v1.0 MLTLLAGSSNRTWQPTMTADTTEPSYWLNWRFAICGVFIAVIMVLSALVIWKYEGSKESEFESEERKESHRQQSVGSLYKDEAWKTCMKTIHPVWLLGFR IVAFVILFCLLTTNTVVDGGGIFFFYTQWTFSLVTIYFGYGSAMSIYGCCKGHDASALDTERGNYIAPYLGEFGDSSNRVKSAVLDQEQDPCPEQKKIAA AWGYVFQIIFQTCAGAVVLTDTVFWFILYPFLMAADFKLDFINICMHSVNAIFLLGDTILNGMVPWSGSDAYSLLRDLCSYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70505			unknown protein		Lus10030594 [exp]	0	1
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040787 [exp]	21.9	0.7170
AT3G46600	GRAS		GRAS family transcription fact...		Lus10040789 [exp]	37.7	0.7126
AT5G18475			Pentatricopeptide repeat (PPR)...		Lus10041927 [exp]	49.6	0.6812
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10034964 [exp]	54.2	0.6802
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Lus10034074 [exp]	56.7	0.6663
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10007327 [exp]	57.5	0.6443
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Lus10035146 [exp]	67.2	0.6287
AT5G61400			Pentatricopeptide repeat (PPR)...		Lus10015716 [exp]	71.5	0.6586
AT4G08460			Protein of unknown function (D...		Lus10024758 [exp]	78.6	0.6665
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000551 [exp]	87.1	0.6053

Compare expression of checked genes

Lus10030594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.