Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23420 195 / 5e-62 YABBY INO, YAB4 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) AT2G26580 137 / 3e-40 YABBY YAB5 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) AT2G45190 136 / 4e-39 YABBY FIL, YAB1, AFO YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) AT1G08465 90 / 6e-22 YABBY YAB2 YABBY2, Plant-specific transcription factor YABBY family protein (.1) AT4G00180 83 / 4e-19 YABBY YAB3 YABBY3, Plant-specific transcription factor YABBY family protein (.1.2) AT1G69180 77 / 3e-17 YABBY CRC CRABS CLAW, Plant-specific transcription factor YABBY family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029135 [exp] 225 / 6e-74 AT1G23420 200 / 9e-65 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Lus10013028 [exp] 214 / 2e-69 AT1G23420 193 / 4e-62 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Lus10030892 [exp] 179 / 2e-57 AT1G23420 102 / 2e-28 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Lus10030893 [exp] 149 / 6e-46 AT1G23420 100 / 2e-27 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Lus10024603 [exp] 149 / 6e-44 AT2G45190 190 / 2e-60 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10032240 [exp] 146 / 7e-43 AT2G45190 193 / 1e-61 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10019407 [exp] 94 / 8e-23 AT2G26580 228 / 8e-77 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Lus10010361 [exp] 89 / 1e-20 AT2G45190 171 / 4e-53 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10036496 [exp] 81 / 3e-18 AT2G45190 183 / 2e-58 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G189000 [exp] 186 / 8e-59 AT1G23420 213 / 7e-70 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Potri.010G042400 [exp] 183 / 2e-57 AT1G23420 191 / 3e-61 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Potri.014G066700 [exp] 144 / 3e-42 AT2G45190 277 / 3e-95 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.003G112800 [exp] 140 / 6e-41 AT2G45190 243 / 1e-81 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.001G120200 [exp] 139 / 2e-40 AT2G45190 236 / 4e-79 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.002G145100 [exp] 138 / 5e-40 AT2G45190 265 / 2e-90 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.006G067800 [exp] 137 / 5e-40 AT2G26580 253 / 5e-87 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Potri.009G000100 [exp] 129 / 4e-37 AT1G08465 215 / 3e-72 YABBY2, Plant-specific transcription factor YABBY family protein (.1) Potri.018G129800 [exp] 127 / 4e-36 AT2G26580 250 / 5e-86 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Potri.001G214700 [exp] 112 / 5e-30 AT1G08465 183 / 8e-59 YABBY2, Plant-specific transcription factor YABBY family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF04690 [flax] [poplar] YABBY YABBY protein
Representative CDS sequence Show only first row Show all	>Lus10030596 pacid=23140690 polypeptide=Lus10030596 locus=Lus10030596.g ID=Lus10030596.BGIv1.0 annot-version=v1.0 ATGTCATCGACAACAATCAGCAGCCAACTGTTTGATCTACCAGCAGCAGCAGAGGACCAGATCTGCTATGTCCAGTGTGGCTTCTGCACCACCATCTTGC TGGTGAGTGTACCATGCAGCAGCTTGTCAATGGTGGTTACAGTGAGGTGTGGCCATTGCACTAGCTTGCTCTCTGTCAATATGATGAAAGCCTCCTTTCT CCCCTTCCATCTCTTGCCAACCTCCCCCGATGTCGGTCTCGAGGACGAGGATCGTAATCAGTTTGGATCTGATGCCACGTTGGAGAATCATTTCATCCCA ATAACTCGTAAATTTTGGATCGCAATTTTGAAGATTGTGAAGGAACAGAAGGAAGCTGACAATCACCAAGTGGGTAGCAGCCTGTATGAAGAGAAGGGTT CATTGTTGTTCATGGACAGCAGCCCACCATTGTTGGTAACTTCTGATCATGAGAATGAAGATGAAGATATTAACCGCAAAATCAATAAACCTCCAGAGAA AAGGCAAAGGGCTCCTTCAGCTTACAATCGGTTCATCAAAGAGGAGATCAAAAGGCTGAAAGCTGAAAATCCAAAAATGGTTCATAAGGAAGCATTCAGC ATGGCCGCAAAAAACTGGGCTCAGTTCCCACCAGCCCATTTCAGAGATGAAATCAAGTTGAAGCAACAACAAGATCATGAGCATCCACGAACACCATGGA ACCACTTTGATGAACCTGCTGAAGATCAGCAAGAAGTTGTGAGTCTTCATTGGGTCATTGGTGATCGATTACAAGCAAAAAGCTCAGTTGAAAGTCGTGA TCTTTGGATCGTATAA
AA sequence Show only first row Show all	>Lus10030596 pacid=23140690 polypeptide=Lus10030596 locus=Lus10030596.g ID=Lus10030596.BGIv1.0 annot-version=v1.0 MSSTTISSQLFDLPAAAEDQICYVQCGFCTTILLVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFLPFHLLPTSPDVGLEDEDRNQFGSDATLENHFIP ITRKFWIAILKIVKEQKEADNHQVGSSLYEEKGSLLFMDSSPPLLVTSDHENEDEDINRKINKPPEKRQRAPSAYNRFIKEEIKRLKAENPKMVHKEAFS MAAKNWAQFPPAHFRDEIKLKQQQDHEHPRTPWNHFDEPAEDQQEVVSLHWVIGDRLQAKSSVESRDLWIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	0	1
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10030020 [exp]	1.0	0.9751
					Lus10022721 [exp]	1.4	0.9621
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	1.7	0.9591
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034505 [exp]	2.0	0.9559
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10024302 [exp]	2.2	0.9507
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10010939 [exp]	5.7	0.9342
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10036596 [exp]	5.8	0.8934
					Lus10034979 [exp]	6.0	0.9426
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040226 [exp]	6.5	0.9426
AT4G23030			MATE efflux family protein (.1...		Lus10027417 [exp]	6.6	0.9121

Compare expression of checked genes

Lus10030596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.