Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10650 380 / 3e-132 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT1G60610 353 / 1e-121 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2), SBP (S-ribonuclease binding protein) family protein (.3) AT1G45976 161 / 7e-47 SBP1 S-ribonuclease binding protein 1 (.1) AT4G17680 129 / 9e-36 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT1G32740 122 / 4e-32 SBP (S-ribonuclease binding protein) family protein (.1) AT5G47050 114 / 4e-29 SBP (S-ribonuclease binding protein) family protein (.1) AT3G12920 110 / 1e-27 BRG3 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) AT1G79110 103 / 4e-25 BRG2 BOI-related gene 2, zinc ion binding (.1.2) AT4G35070 97 / 4e-23 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT5G45100 93 / 7e-22 BRG1 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030599 [exp] 685 / 0 AT1G10650 380 / 4e-132 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10013027 [exp] 545 / 0 AT1G10650 382 / 3e-133 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030891 [exp] 491 / 5e-177 AT1G10650 275 / 1e-92 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10029136 [exp] 458 / 1e-163 AT1G10650 314 / 7e-107 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10001131 [exp] 164 / 7e-48 AT1G45976 407 / 7e-143 S-ribonuclease binding protein 1 (.1) Lus10031780 [exp] 105 / 9e-26 AT3G12920 260 / 3e-85 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Lus10018294 [exp] 105 / 1e-25 AT5G45100 266 / 3e-88 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10040613 [exp] 104 / 2e-25 AT5G45100 264 / 3e-87 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10014118 [exp] 97 / 9e-24 AT4G35070 171 / 7e-54 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G042200 [exp] 518 / 0 AT1G10650 393 / 2e-137 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.012G082200 [exp] 311 / 3e-105 AT1G10650 266 / 2e-87 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.014G027000 [exp] 164 / 7e-48 AT1G45976 380 / 2e-132 S-ribonuclease binding protein 1 (.1) Potri.002G124700 [exp] 163 / 1e-47 AT1G45976 378 / 2e-131 S-ribonuclease binding protein 1 (.1) Potri.001G148600 [exp] 162 / 5e-47 AT1G32740 221 / 4e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.003G085800 [exp] 149 / 4e-42 AT1G32740 220 / 9e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.015G118000 [exp] 110 / 9e-28 AT5G45100 259 / 2e-85 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.001G439600 [exp] 102 / 2e-24 AT3G12920 256 / 1e-83 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Potri.012G119200 [exp] 100 / 6e-24 AT5G45100 244 / 1e-79 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.011G142700 [exp] 100 / 1e-23 AT3G12920 233 / 1e-74 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030597 pacid=23140661 polypeptide=Lus10030597 locus=Lus10030597.g ID=Lus10030597.BGIv1.0 annot-version=v1.0 ATGCTTGGAGGCAACAGTGGCAATCCCATGCTTCCTGTTTTCTTGGACGAGAACCGAATTCCTTACCAGAACAACCCTTCAAATCAGCTCCAGCTATTTG TGCCAGCTGGATGTAACATTGATGCTGTGAACTATTTCGGACGCGAGCATGTCTCCCCTATGCTCCAACCGAATAAACGAATCAGGGAGTCTGAAGATTT CGATAGGCAACAAAAGCTCCAAATTTCATTGAACTACAACATTTGCCAAGATGAAGCTGACCGTGTTCCGAACCCTACTGCTGTGTCTACCGGGTTACGA CTATCGTATGACGACGATGAGCGAAACTCGTCTCTTACTTCTGCTAGTGGAAGCATGACAGCAGCACCGTCTGTGATCTTGTCGCTCGGGGACAATATCC GGACTGAACTCGATCGCCAGAAAGAGGAATTCGATCAGTACATCAAACTTCAGGAGGAGCATTTGGCCAAGGGTGTGAGGGATATCAAGCAGAGACATGT GGCATCGTTTCTAGCATCAATCGAGAAGGGCGTCGCGAAGAAGATTCGGGAAAAGGACATAGAGATCGACAACATGAACCTTCGAAACAAGGAGTTGATC GATAGAATCAAGCAAGTGGCTGCCGAAGCTCAGAATTGGCACTATAGAGCGAAATACAACGAATCGCTCGTGAATGTCCTCAAGGCCAATCTCCAGCAGG CGATTTCTCAGGGTGCTGATCAAGTCAAGGAAGGATTTGGAGACAGTGAGTTTGATGATGCTGCTTCCTGCATTGATCCCAACAACAACTACCTCAACGT CGGGCCTTCTACGAGACCTCTGTCGAGAAAAGATCGGATGACTACTTGCAGATCGTGCAAAACAAGGGAGGTTTCGGTACTGTTGATGCCGTGCAGGCAT CTGTGTTTATGTATGGATTGTGATGTGTTTATCAATGTTTGCCCTGTATGCCAGTTGATCAAAACTACCAGCGTCCAAGTATACTTGTCGTAA
AA sequence Show only first row Show all	>Lus10030597 pacid=23140661 polypeptide=Lus10030597 locus=Lus10030597.g ID=Lus10030597.BGIv1.0 annot-version=v1.0 MLGGNSGNPMLPVFLDENRIPYQNNPSNQLQLFVPAGCNIDAVNYFGREHVSPMLQPNKRIRESEDFDRQQKLQISLNYNICQDEADRVPNPTAVSTGLR LSYDDDERNSSLTSASGSMTAAPSVILSLGDNIRTELDRQKEEFDQYIKLQEEHLAKGVRDIKQRHVASFLASIEKGVAKKIREKDIEIDNMNLRNKELI DRIKQVAAEAQNWHYRAKYNESLVNVLKANLQQAISQGADQVKEGFGDSEFDDAASCIDPNNNYLNVGPSTRPLSRKDRMTTCRSCKTREVSVLLMPCRH LCLCMDCDVFINVCPVCQLIKTTSVQVYLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030597 [exp]	0	1
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030599 [exp]	1.0	0.9819
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10022102 [exp]	8.7	0.9005
AT2G42760			unknown protein		Lus10015228 [exp]	10.4	0.9043
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10007463 [exp]	11.7	0.8786
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10037332 [exp]	12.2	0.8561
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10025681 [exp]	13.7	0.8974
AT1G73390			Endosomal targeting BRO1-like ...		Lus10031313 [exp]	13.7	0.8436
AT2G37710		RLK	receptor lectin kinase (.1)		Lus10033776 [exp]	14.8	0.8899
AT5G66590			CAP (Cysteine-rich secretory p...		Lus10022481 [exp]	18.4	0.8359
AT1G54120			unknown protein		Lus10013152 [exp]	20.0	0.8579

Compare expression of checked genes

Lus10030597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.