Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27790 263 / 5e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G27300 225 / 1e-70 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030890 [exp] 476 / 1e-173 AT2G27790 263 / 2e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10030600 [exp] 421 / 9e-152 AT2G27790 272 / 6e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G167600 [exp] 298 / 4e-103 AT2G27790 269 / 2e-91 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G221301 [exp] 194 / 2e-62 AT2G27790 187 / 8e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030598 pacid=23140748 polypeptide=Lus10030598 locus=Lus10030598.g ID=Lus10030598.BGIv1.0 annot-version=v1.0 ATGCCTCGCTACAAAGACGAGCCTACCGCGGTTCGCGTTTATACAGTCTGCGACGAATCAAGGTCTGATCGGAAAAATCGTCCGATTCACAAAAAGTTCT GCAGATACTTAATCGTAAGGAACGTACCTGCTCTGGGTTGCGGCGACGACTTATCGAAGCTATTCGCCACCTACGGCGACGTCGAAGAAGTGAAACCGAT GGATGAAGAGGATTGCGAGCCGTTCACAGACGTCTACTGGATCAAATTTCGTCTTGCTAGCAATGCCAGGTTTGCAAAGAGGAAGTTGGAGGATAGTACA TTCTTAGGGAACAGGTTGCAAGTTGAATATGCTCCTCAGTTTGAGAGCCTTACAGACACCATGGATAAGCTAGAAGGGAGGAGAAAGGAAGTTCTTGCTA GACTGAATCCTGGACGATCTCAAGGAGCCAAAGTTCTTACTCAAGGTGGTTCTAGTACTGTTTCTCCTCAGCCATTGAATCTCAATCAGTCCTGTGCTCG AGGATCGGAAGGGAGTTTGCAGAGAAATGATGCACCGATGTCAAGGGTTTCTTCTGATAAGGACTACTTTCCATCTCGATCCATGAACGAGACCGTTAAA TCAGTTAGGGAGAAGCTTGATAAGATAGAGTCAAGCTCGCAGCAGCAAGCTGGACCTGCACCTAAGAAAACAAGACTGGACAACAGAAGACGGATTTAG
AA sequence Show only first row Show all	>Lus10030598 pacid=23140748 polypeptide=Lus10030598 locus=Lus10030598.g ID=Lus10030598.BGIv1.0 annot-version=v1.0 MPRYKDEPTAVRVYTVCDESRSDRKNRPIHKKFCRYLIVRNVPALGCGDDLSKLFATYGDVEEVKPMDEEDCEPFTDVYWIKFRLASNARFAKRKLEDST FLGNRLQVEYAPQFESLTDTMDKLEGRRKEVLARLNPGRSQGAKVLTQGGSSTVSPQPLNLNQSCARGSEGSLQRNDAPMSRVSSDKDYFPSRSMNETVK SVREKLDKIESSSQQQAGPAPKKTRLDNRRRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030598 [exp]	0	1
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10006873 [exp]	8.8	0.7787
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Lus10026513 [exp]	8.9	0.7859
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10006555 [exp]	14.5	0.7703
					Lus10011739 [exp]	17.0	0.7393
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10035028 [exp]	19.4	0.7650
AT1G17930			Aminotransferase-like, plant m...		Lus10024265 [exp]	19.8	0.6730
AT1G67000			Protein kinase superfamily pro...		Lus10026761 [exp]	20.6	0.7226
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Lus10032680 [exp]	23.4	0.7267
AT5G04270			DHHC-type zinc finger family p...		Lus10037973 [exp]	24.7	0.6752
AT3G10530			Transducin/WD40 repeat-like su...		Lus10032289 [exp]	25.0	0.7359

Compare expression of checked genes

Lus10030598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.