Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27790 272 / 5e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G27300 238 / 8e-76 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT4G19610 40 / 0.0009 nucleotide binding;nucleic acid binding;RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030598 [exp] 421 / 8e-152 AT2G27790 263 / 5e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10030890 [exp] 418 / 7e-151 AT2G27790 263 / 2e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G167600 [exp] 303 / 1e-105 AT2G27790 269 / 2e-91 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G221301 [exp] 206 / 2e-67 AT2G27790 187 / 8e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030600 pacid=23140630 polypeptide=Lus10030600 locus=Lus10030600.g ID=Lus10030600.BGIv1.0 annot-version=v1.0 ATGCCTCGCTACAAAGACGAGCCTACCGCGGTTCGCGTTTACACAGTCTGCGACGAATCAAGATACTTAATCGTAAGGAACGTACCAGCTCTGGGTTGCG GCGACGACTTGTCGAAGCTATTCGCCACCTACGGCGACGTCGAAGAGGTTAAACCGATGGATGAAGAGGATTGCGAGCCGTTCACAGACGTCTACTGGAT CAAATTTCGTCTTGCTAGCAATGCCAGGTTTGCAAAGAGGAAGTTGGATGATAGTACATTCTTAGGGAACAGATTGCAAGTTGAATATGCTCCTCAGTTT GAGAGCCTTGCAGACACCATGGATAAGCTAGAAGGGAGGAGAAAGGAAGTTCTTGCTAGACTGAATCCTGGAAGATCTCAAAGAGCCAAAGTTCTTACTC AAGGTGGTTCAAGTAATGTTTCTCCTCAGCCATTGAATCTCAATCACTCTTGTGCTAGAGGATCGGAAGGGAGTTCTCGTAGAAATGATGTACCGATGTC AAGGGTTTCTTCTGATCAGGACTACTTTCCATCTCGATCCATGAACGAGACTGTTAAATCGGTTAGGGAGAAGCTTGATAAGATAGAGTCAAGCTCGCAG CAGCAAGCTGGACCTGCACCTAAGAAAACAAGACTGGACAACAGAAGACGGATTTAG
AA sequence Show only first row Show all	>Lus10030600 pacid=23140630 polypeptide=Lus10030600 locus=Lus10030600.g ID=Lus10030600.BGIv1.0 annot-version=v1.0 MPRYKDEPTAVRVYTVCDESRYLIVRNVPALGCGDDLSKLFATYGDVEEVKPMDEEDCEPFTDVYWIKFRLASNARFAKRKLDDSTFLGNRLQVEYAPQF ESLADTMDKLEGRRKEVLARLNPGRSQRAKVLTQGGSSNVSPQPLNLNHSCARGSEGSSRRNDVPMSRVSSDQDYFPSRSMNETVKSVREKLDKIESSSQ QQAGPAPKKTRLDNRRRI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030600 [exp]	0	1
					Lus10014678 [exp]	2.8	0.9245
AT4G37020			unknown protein		Lus10000435 [exp]	3.0	0.8942
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10005437 [exp]	3.9	0.9201
AT4G36720		HVA22K	HVA22-like protein K (.1)		Lus10010093 [exp]	4.0	0.9129
AT5G19670			Exostosin family protein (.1)		Lus10043239 [exp]	4.9	0.8907
AT3G18760			Translation elongation factor...		Lus10038301 [exp]	4.9	0.8952
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	5.7	0.9234
AT5G62980		FOLB2	Dihydroneopterin aldolase (.1)		Lus10021252 [exp]	6.0	0.8821
AT5G10620			methyltransferases (.1)		Lus10026980 [exp]	6.2	0.8818
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10037613 [exp]	6.3	0.9128

Compare expression of checked genes

Lus10030600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.