Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57560 162 / 9e-48 NAGK N-acetyl-l-glutamate kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030889 [exp] 273 / 2e-91 AT3G57560 450 / 1e-159 N-acetyl-l-glutamate kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G280100 [exp] 195 / 8e-61 AT3G57560 416 / 4e-146 N-acetyl-l-glutamate kinase (.1) Potri.018G001600 [exp] 194 / 3e-60 AT3G57560 417 / 1e-146 N-acetyl-l-glutamate kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00696 [flax] [poplar] AA_kinase Amino acid kinase family
Representative CDS sequence Show only first row Show all	>Lus10030601 pacid=23140575 polypeptide=Lus10030601 locus=Lus10030601.g ID=Lus10030601.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCCTCTAAAACGATCTTCTTCAACCCTCAGACCAAATCCCTAATTCCTTCAACCCTCTGCAAATCCTCATCGCCACATCATTTGACTCTCA AACAGCGCCATCATCGTTCATTAACCATACGAGCTTCCTCCTCCAAATCCCCCGAGCAGTTCAGGGTGGAGATCCTCTCGGAATCCCTACCCTACATCCA GAAATTTAGAGGGAAAACCATCGTCGTCAAATACGGCGGCGCAGCCATGAAAGACCCAGACTTAAAGGCCTCGGTCGTCAGTGACCTCGTCCTTCTCTCC TGCGTCGGCCTCCGTCCCGTCCTGGTCCACGGTGGCGGGCCGGAGATCAACCACTGGCTCAAGCTTCTCAACATCGAGCCCCTCTTCCATGAGGGTCTCC GAGTGACCGACGCCAAGACAATGGAGATCGTGTCCATGGTTCTGGTCGGAAAGTCGTATAACATAAACGCGGACACGGTGGCGGGAGAGCGGGCGGCGGC GCTAGGAGCTGAGAAACTGATCTTGCTTACCGACGTGGCGGGGATACTAGAGGACAGAGACGACCCTGAGAGTTTGGTGAAAGAGACGGACATTGAAGGG GTGCATAAACTAATACATGAGAAGAAGGTGGCTGGAGGGATGATACCAAAGGTGAATTGCTGCGTGAGGTCCATATCTCAGGGTGTGAGGACTGCAAGCA TTATCGATGGTAGGGTTCAACACTCGTTGCTTCACGAGCTTATGTCCGAGGAAGGCTTGGGTACCATGATCACTGCTTGA
AA sequence Show only first row Show all	>Lus10030601 pacid=23140575 polypeptide=Lus10030601 locus=Lus10030601.g ID=Lus10030601.BGIv1.0 annot-version=v1.0 MAAASKTIFFNPQTKSLIPSTLCKSSSPHHLTLKQRHHRSLTIRASSSKSPEQFRVEILSESLPYIQKFRGKTIVVKYGGAAMKDPDLKASVVSDLVLLS CVGLRPVLVHGGGPEINHWLKLLNIEPLFHEGLRVTDAKTMEIVSMVLVGKSYNINADTVAGERAAALGAEKLILLTDVAGILEDRDDPESLVKETDIEG VHKLIHEKKVAGGMIPKVNCCVRSISQGVRTASIIDGRVQHSLLHELMSEEGLGTMITA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Lus10030601 [exp]	0	1
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10042951 [exp]	1.4	0.9263
AT5G42060			DEK, chromatin associated prot...		Lus10032409 [exp]	1.7	0.9221
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10013537 [exp]	2.0	0.9488
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10015605 [exp]	2.2	0.9111
AT1G14060			GCK domain-containing protein ...		Lus10026621 [exp]	4.0	0.9147
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Lus10027463 [exp]	5.4	0.8831
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Lus10015058 [exp]	5.5	0.8974
AT2G03430			Ankyrin repeat family protein ...		Lus10037116 [exp]	7.7	0.9049
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10004089 [exp]	10.4	0.8946
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10018487 [exp]	10.8	0.9000

Compare expression of checked genes

Lus10030601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.