Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23460 589 / 0 Pectin lyase-like superfamily protein (.1) AT1G70500 565 / 0 Pectin lyase-like superfamily protein (.1) AT1G80170 333 / 5e-110 Pectin lyase-like superfamily protein (.1) AT1G02460 307 / 4e-99 Pectin lyase-like superfamily protein (.1) AT3G57510 305 / 7e-99 ADPG1 Pectin lyase-like superfamily protein (.1) AT2G41850 302 / 6e-98 ADPG2, PGAZAT ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) AT5G14650 297 / 5e-96 Pectin lyase-like superfamily protein (.1) AT3G07970 297 / 8e-96 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1) AT1G48100 294 / 3e-94 Pectin lyase-like superfamily protein (.1) AT1G56710 292 / 4e-94 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030888 [exp] 539 / 0 AT1G70500 461 / 3e-161 Pectin lyase-like superfamily protein (.1) Lus10029139 [exp] 370 / 2e-124 AT1G23460 574 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036084 [exp] 315 / 9e-103 AT1G80170 491 / 2e-172 Pectin lyase-like superfamily protein (.1) Lus10019711 [exp] 313 / 6e-102 AT3G07970 461 / 1e-160 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10029511 [exp] 303 / 1e-97 AT3G07970 480 / 1e-167 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10026299 [exp] 297 / 7e-97 AT3G07970 418 / 3e-145 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10042371 [exp] 298 / 7e-96 AT3G07970 432 / 5e-149 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10030886 [exp] 291 / 2e-92 AT1G10640 658 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030604 [exp] 287 / 8e-91 AT1G60590 665 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G211900 [exp] 639 / 0 AT1G23460 638 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.011G159000 [exp] 635 / 0 AT1G23460 667 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G463000 [exp] 617 / 0 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G171900 [exp] 334 / 3e-110 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1) Potri.014G115700 [exp] 320 / 8e-104 AT1G02460 593 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.009G060400 [exp] 318 / 1e-103 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.015G088600 [exp] 316 / 2e-103 AT1G70500 323 / 1e-106 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 317 / 4e-103 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G005500 [exp] 315 / 3e-102 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.011G159801 [exp] 301 / 5e-101 AT1G23460 290 / 2e-97 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10030602 pacid=23140548 polypeptide=Lus10030602 locus=Lus10030602.g ID=Lus10030602.BGIv1.0 annot-version=v1.0 ATGGACAGGTTATTCTTCATTTATTTCATTGGCTTGCTGTTAGTGAGCCATGGAGTTGCAGGCAACATTGTATATGATGAACTCGCAACGCTTGAGAAGC TCGAAACCTTGGAGGAAGTGGACGATGATGATTGTGATGTAACGTCGTGGAGGAGCGAACGGAGCGGCAAGGTTCTGGTGAATGTCGATAGCTTCGGTGC TGCTGGAGATGGAGTTTCTGATGATACTCAGGCCTTTGTAAAAGCTTGGAGCACTGCCTGTAATGCATCATCCAACGCAGTGTTCTTGGTTCCTCTAGGT CGCCAATATCTGGTAGCTGCGACGAAATTCAAAGGACCTTGTGGTGATAAGCTGATTGTCCAGATTGATGGAACAATAATAGCACCGGACGAACCGGAGA GCTGGGATCAAGATCTTGCGAGATTATGGCTTGACTTCAGTAAGCTGAGTGGGGTTGTCTTCCAAGGGAATGGAGTCATTGATGGCTCTGGCAGTAAATG GTGGGCTGCTTCCTGTAAAAAGAACAAGACAAATGCAAGTTCATTGATTTCTTCAACCATTTTTTATTCTTTATATATTAACAGAAGTAAAATCTTACAC TGGTTTCTTTCTCTGTGTTTTATGCAGCCTTGCAAAGCAGCACCAACTGCAATAACCATTGATTCCAGCAATGGAGTGAAAGTCAAAGGGCTGACCATCA AGAACAGCCAACAGATGAATTTCGTGATTTCAAAATCCAGCTCAGTCCGAGTCTCTGACGTGTTAGTCTCAGCTCCTGGAGACAGTCCCAACACAGACGG GATCCACATTACTCAGTCAAGTGATGTTGTTCTCCAAAACTGCAAAATCGGAACAGGGGATGATTGTGTCTCCATCGTCAATGGTAGTTCCAACATCAGG ATGAAGAGACTCTATTGTGGACCTGGACATGGCATCAGCATTGGGAGCCTTGGACAGGACAACTCAACCGGCATTGTTACAGGAGTTATCCTAGACACAG CACTCCTCCGGAACACAACTAATGGCCTCAGAATCAAGACATGGCAGGGTGGTAATGGTCATGTTCGTGGAGTGCGTTATGACAATGTGCAGATGGAGAA TGTTGCAAATCCTATCATCATTGACCAGTTCTACTGTGATTCCCCGAATGCCTGCCAGAACCAGACAGAAGCTGTGGAGATAAGCAAGATCATGTACAGA AACATAACCGGAACTTCCAAGAGTGCAAAAGCCATGAAGTTTGCTTGCAGCGATACGGTTCCATGCAGTGATATAGTCCTAATCAATGTCAACTTAGAAG GGAGAGATGGCACTGTGGAGACTTACTGCAACTCCGCCGAAGGGTCTGCATATGGCATCGTTCGTCCTTCAGTCGACTGCCTATCATCGCACGATAAGGA TTACGCTTCGACATCCAATCCACAGTTTATAAGAGACATGAACATTGTTGAAGTTTCAGAAGCCACCAGCCAGGACTTTGTCCACACAGAGCTCTAA
AA sequence Show only first row Show all	>Lus10030602 pacid=23140548 polypeptide=Lus10030602 locus=Lus10030602.g ID=Lus10030602.BGIv1.0 annot-version=v1.0 MDRLFFIYFIGLLLVSHGVAGNIVYDELATLEKLETLEEVDDDDCDVTSWRSERSGKVLVNVDSFGAAGDGVSDDTQAFVKAWSTACNASSNAVFLVPLG RQYLVAATKFKGPCGDKLIVQIDGTIIAPDEPESWDQDLARLWLDFSKLSGVVFQGNGVIDGSGSKWWAASCKKNKTNASSLISSTIFYSLYINRSKILH WFLSLCFMQPCKAAPTAITIDSSNGVKVKGLTIKNSQQMNFVISKSSSVRVSDVLVSAPGDSPNTDGIHITQSSDVVLQNCKIGTGDDCVSIVNGSSNIR MKRLYCGPGHGISIGSLGQDNSTGIVTGVILDTALLRNTTNGLRIKTWQGGNGHVRGVRYDNVQMENVANPIIIDQFYCDSPNACQNQTEAVEISKIMYR NITGTSKSAKAMKFACSDTVPCSDIVLINVNLEGRDGTVETYCNSAEGSAYGIVRPSVDCLSSHDKDYASTSNPQFIRDMNIVEVSEATSQDFVHTEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23460			Pectin lyase-like superfamily ...		Lus10030602 [exp]	0	1
AT1G70500			Pectin lyase-like superfamily ...		Lus10030888 [exp]	1.0	0.9913
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041338 [exp]	2.4	0.9897
AT1G76250			unknown protein		Lus10012274 [exp]	4.2	0.9738
AT5G22980		SCPL47	serine carboxypeptidase-like 4...		Lus10000147 [exp]	4.6	0.9876
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037381 [exp]	4.9	0.9871
AT3G49070			Protein of unknown function (D...		Lus10039258 [exp]	6.5	0.9759
					Lus10018742 [exp]	7.5	0.9702
AT3G13650			Disease resistance-responsive ...		Lus10039561 [exp]	7.7	0.9811
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10015737 [exp]	8.1	0.9719
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10034325 [exp]	8.4	0.9474

Compare expression of checked genes

Lus10030602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.