Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52640 671 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 271 / 2e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49730 229 / 2e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G15010 227 / 2e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 218 / 9e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62470 217 / 2e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 214 / 2e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20300 213 / 2e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 214 / 4e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65820 212 / 3e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030887 [exp] 1016 / 0 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 270 / 5e-83 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 231 / 3e-69 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011566 [exp] 229 / 1e-67 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 219 / 7e-64 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021991 [exp] 215 / 2e-62 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034419 [exp] 214 / 2e-62 AT1G73400 684 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 214 / 7e-62 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019141 [exp] 209 / 2e-60 AT1G73400 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G102700 [exp] 773 / 0 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 279 / 3e-88 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 248 / 2e-75 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G245400 [exp] 223 / 3e-66 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G176100 [exp] 224 / 9e-66 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G121400 [exp] 218 / 3e-63 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G053600 [exp] 214 / 3e-62 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G098600 [exp] 211 / 1e-61 AT1G73400 670 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G066700 [exp] 210 / 2e-61 AT1G20300 213 / 5e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G070200 [exp] 208 / 4e-61 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030603 pacid=23140774 polypeptide=Lus10030603 locus=Lus10030603.g ID=Lus10030603.BGIv1.0 annot-version=v1.0 ATGGCCACCAGATTCCTCCTTCCCTTCCGCCGTGCTCATCTCCGCTTTCTGTCTTCTTTCGCGGCCGAGGAGACAATTCAAACCGAGCCCTTGCCGGAGC TGGTAAGTCAGATATCTCGCCTCCTCAGCGACCACCGGAACCCTCACCACGACTTGGAGCGTTCCCTCCGTACGTACCGCTCTAAAGTCTCATCCCAGGT AGTCGAGCAGGTCTTGAAGCGCTGCAAGAATCTCGGATTCTCCGCCCACAGATTCTTTATCTGGGCCAACACTATCCCTGGATTCCAACATTCTCCCGAT AGCTTTCACATTTTGGTCGACATTTTAGGCGCCAGTAGGCAGTTCGCCATACTGTGGGATTTCCTGATCGATATAAGAGATTCTGATTACGGTTTTCAAG TTAAAGCAGAGACTTTTTGGCTTGTCTTTAGAGCTTACAGCAGGGCGAACCTTCCCGATGAAGCCATTCGAAGTTTCGGGAGAATGGTTGAGTTTGATTT GAAGCCCAGAATCGACGATGTGGATCAGCTTGTCTATGTTCTATGCAAGCGTAAGCAAGTGAAGCAAGCACAGGTGTTTTTCGATAGAGTTAAGCATGAA TTTGAGCCGACGGTTAAGACTTATAGCATTTTAGTGCGTGGGTGGGGTGATATTGGGGATAATGAGTCTGCAAGGAAGGTGTTCGACGAAATGCTCCAAA GAGGTTGTACCGTGGACGTGCTTGCCTATAACAGTTTGTTGGAGGCGTTATGTAAAGGAGGGAGTGTCGATGAAGCTTATAACATGTTTCGAGAGTTCGG ATCCGTTGGAATCAAACCGGATGCTTGTAGCTACGGGATCTTCATCCGTGCTTACTGCGAATCGAGTGATATTCATTCTGCTTTCGGGGTGCTTGATCGG ATGAGAAGGTATGAACTTCTTCCGAATGTGTTCACGTATAATTGCCTTATCAAGAAGCTTTGTAAGACGGATTGTGTTGACGAAGCTTACCAGCTTCTGG ATGAGATGCTCGGGAAGGGAGTGTCTCCGGATGTTTGGAGTTACAATGCGATTTTGGCATACCATTGCGAGCATACTGAGGTCAATAGAGCGACCAATCT GGTTTCTCGAATGGCCAAGGACGGTTGCTCACCTGACCGGCATAGCTACAACATGGTGCTTAAATTGCTGATAAGGATCGGTCGGTTTGACAGGGCTACT CAGGTATGGGAAAGCATGGAGGAGAGGAAGTTTTTTCCATCAGTTTCGACCTATGCGGTTATGATCCATGGCTTGTGCAAGAAGAAGGGGAAGCTCGAAG AGGCGTGCAAGTATTTCGAGATGATGGTTGATGAGGGAGTTCCGCCGTACTCTTCCACGGTTGAGATGGTGAGGAACCGGCTTATGGGGTTTGGACTGAT GGATAACATTGAGATACTTGCCGGTAAGATGGAAAGAAGCTCTTGTTGTTCGATACGGGAGTTGGCTATTGAAATGAGAGGGAACAAGACTCATGTGAGG TCTAGAAAGGAAGAAACCGAGTCTGAAAGCGATTGA
AA sequence Show only first row Show all	>Lus10030603 pacid=23140774 polypeptide=Lus10030603 locus=Lus10030603.g ID=Lus10030603.BGIv1.0 annot-version=v1.0 MATRFLLPFRRAHLRFLSSFAAEETIQTEPLPELVSQISRLLSDHRNPHHDLERSLRTYRSKVSSQVVEQVLKRCKNLGFSAHRFFIWANTIPGFQHSPD SFHILVDILGASRQFAILWDFLIDIRDSDYGFQVKAETFWLVFRAYSRANLPDEAIRSFGRMVEFDLKPRIDDVDQLVYVLCKRKQVKQAQVFFDRVKHE FEPTVKTYSILVRGWGDIGDNESARKVFDEMLQRGCTVDVLAYNSLLEALCKGGSVDEAYNMFREFGSVGIKPDACSYGIFIRAYCESSDIHSAFGVLDR MRRYELLPNVFTYNCLIKKLCKTDCVDEAYQLLDEMLGKGVSPDVWSYNAILAYHCEHTEVNRATNLVSRMAKDGCSPDRHSYNMVLKLLIRIGRFDRAT QVWESMEERKFFPSVSTYAVMIHGLCKKKGKLEEACKYFEMMVDEGVPPYSSTVEMVRNRLMGFGLMDNIEILAGKMERSSCCSIRELAIEMRGNKTHVR SRKEETESESD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52640			Pentatricopeptide repeat (PPR)...		Lus10030603 [exp]	0	1
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10042768 [exp]	5.2	0.8691
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10003383 [exp]	9.4	0.8620
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10007881 [exp]	18.0	0.8386
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10009940 [exp]	18.7	0.8475
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10018978 [exp]	19.6	0.8550
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10011019 [exp]	20.9	0.8594
AT4G32910			unknown protein		Lus10038723 [exp]	21.1	0.8580
AT4G01860			Transducin family protein / WD...		Lus10009986 [exp]	22.4	0.8568
AT4G16835			Tetratricopeptide repeat (TPR)...		Lus10003382 [exp]	24.1	0.8003
AT4G23540			ARM repeat superfamily protein...		Lus10035446 [exp]	24.3	0.8615

Compare expression of checked genes

Lus10030603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.