Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60590 650 / 0 Pectin lyase-like superfamily protein (.1) AT1G10640 635 / 0 Pectin lyase-like superfamily protein (.1) AT5G14650 512 / 1e-179 Pectin lyase-like superfamily protein (.1) AT3G26610 395 / 5e-133 Pectin lyase-like superfamily protein (.1) AT1G48100 372 / 7e-124 Pectin lyase-like superfamily protein (.1) AT1G02460 351 / 9e-116 Pectin lyase-like superfamily protein (.1) AT1G56710 342 / 6e-113 Pectin lyase-like superfamily protein (.1) AT4G01890 331 / 2e-108 Pectin lyase-like superfamily protein (.1) AT1G23460 306 / 7e-99 Pectin lyase-like superfamily protein (.1) AT1G70500 298 / 3e-95 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030886 [exp] 978 / 0 AT1G10640 658 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029140 [exp] 761 / 0 AT1G60590 660 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10013025 [exp] 743 / 0 AT1G10640 634 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029121 [exp] 407 / 1e-137 AT3G26610 566 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009994 [exp] 349 / 9e-115 AT1G02460 606 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037834 [exp] 345 / 2e-113 AT1G48100 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10017109 [exp] 344 / 3e-113 AT1G48100 647 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038059 [exp] 345 / 4e-113 AT1G02460 542 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 296 / 2e-94 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G042100 [exp] 767 / 0 AT1G60590 675 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G189200 [exp] 739 / 0 AT1G60590 644 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G346800 [exp] 553 / 0 AT5G14650 506 / 5e-178 Pectin lyase-like superfamily protein (.1) Potri.008G188300 [exp] 399 / 2e-134 AT3G26610 545 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G044001 [exp] 398 / 4e-134 AT3G26610 579 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G152000 [exp] 372 / 4e-124 AT1G48100 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G005500 [exp] 370 / 4e-123 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 367 / 2e-122 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G100500 [exp] 363 / 9e-121 AT1G48100 653 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G115700 [exp] 364 / 2e-120 AT1G02460 593 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10030604 pacid=23140687 polypeptide=Lus10030604 locus=Lus10030604.g ID=Lus10030604.BGIv1.0 annot-version=v1.0 ATGAAAGGGGTGAATTGCAGAAGCTTCACATTCATGGTGTTGGTTGCGTTTCTAGTTTGGTCAGCAAGTTTTGATACTTGCATTGCAAGGAGAGGCAGAC ATTGGAGGCAGAACAGAGGGTTCTCAGCTTCTCTGACAAAGAAGAAGGTCAAAAGCCATGGAAGCAGCCACCTCAGTAACAACCATTACAATGGAGGCAG ATCGTCGAAGTCACCAAAGAAATCTCTTTCACCTAAAGCTCCTAATTCGCCAACTCCCTCGTCTCCGATGAAACTACCAAAGCATGTTCCAGTAGCATCA CCAGAACCTCCTTCACCTAGTACTAGTAGGCCGCACGCAGATTCGTTGACATTCAATGTCGTCACTTTTGGTGCCAAGGGAGATGAAAAGAGTGATGACA CAAAGGCATTCCAGGCTACATGGGCAGCTGCTTGTAAAGTTGCTAATTCAATTATGCTTGTTCCAGAGGAATATCGATTCCTTGTTGGACCTATTTCTTT CTCTGGTCCATATTGTCAACAAGGCATCACCTTCCAGCTGGATGGCACAATTGTTGCACCAACGAACTCCTATGTTTGGGGCAAAGGATTGCTGCAGTGG CTGGAATTCAGCAAGCTAGCACAGATCACAATCCAAGGGAAAGGTACCGTTGATGGGAGTGGTTCAGTGTGGTGGCAAGACAATCCACTTGATGTACCTG AAGACGGATTAATGCAGCAGATTATCCTGTTAAACAACACTCTAGAGAAACAACCACCACGAACGGTAAGAAGTGAACTCAGTAGCAAAATGCCAAGCAT CAAGCCGACGGCACTGAGGTTTTACGGAAGTGTGAATGTGACGGTCACGGGAATAACAATTCAGAACAGTCCCCAATGCCACCTCAAGTTTGACAACTGC ATTGGAGTGATGGTACATCATATTAGAGTCTCGTCTCCTGGAGACAGTCCTAATACAGATGGAGTCCACTTGCAGAATTCCAGAGATGTGCTGATCCATA GCAGCCTCCTTGCATGCGGAGACGACTGCATTTCGATACAAACAGGATGCTCAAATGTATACATACATGATGTAAACTGCGGTCCAGGCCACGGAATCAG CATCGGAAGTTTGGGAAGGGACAATGCACGGGCCTGTGTCTCTAACGTCACTGTCAAAAACGTCAATATGCACAACACAATGACCGGTGTTAGGATCAAG ACATGGCAGGGCGGATCAGGCTCGGTGTACGGGATTATGTTCTCAAACATTCAAGTTTCCGAAGTCCAATTCCCAATTGTGATTGATCAATACTACTGTG ACAAGAGTACATGCAAGAACCAATCATCAGCAGTGTCTGTATCGGGAATCAACTACGAACAAATCAAAGGAACCTACACGGTGAAACCCGTGCATTTTGC CTGCAGCGATAACTTACCATGTGCGGATATAAGTTTAACCAGCATTGAGTTGAAACCGCTGCAAGAGAAGTTCCACATGTACGATCCCTTCTGCTGGAAT ACATTTGGAGAGTTGAATACTCCGGCCGTCCCTCCAATTGGATGCCTCCAAATCGGTAAGCCGACAAGCAACCGGCCCCAAACCGATCGCGATTCGTGTT GA
AA sequence Show only first row Show all	>Lus10030604 pacid=23140687 polypeptide=Lus10030604 locus=Lus10030604.g ID=Lus10030604.BGIv1.0 annot-version=v1.0 MKGVNCRSFTFMVLVAFLVWSASFDTCIARRGRHWRQNRGFSASLTKKKVKSHGSSHLSNNHYNGGRSSKSPKKSLSPKAPNSPTPSSPMKLPKHVPVAS PEPPSPSTSRPHADSLTFNVVTFGAKGDEKSDDTKAFQATWAAACKVANSIMLVPEEYRFLVGPISFSGPYCQQGITFQLDGTIVAPTNSYVWGKGLLQW LEFSKLAQITIQGKGTVDGSGSVWWQDNPLDVPEDGLMQQIILLNNTLEKQPPRTVRSELSSKMPSIKPTALRFYGSVNVTVTGITIQNSPQCHLKFDNC IGVMVHHIRVSSPGDSPNTDGVHLQNSRDVLIHSSLLACGDDCISIQTGCSNVYIHDVNCGPGHGISIGSLGRDNARACVSNVTVKNVNMHNTMTGVRIK TWQGGSGSVYGIMFSNIQVSEVQFPIVIDQYYCDKSTCKNQSSAVSVSGINYEQIKGTYTVKPVHFACSDNLPCADISLTSIELKPLQEKFHMYDPFCWN TFGELNTPAVPPIGCLQIGKPTSNRPQTDRDSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60590			Pectin lyase-like superfamily ...		Lus10030604 [exp]	0	1
AT2G23530			Zinc-finger domain of monoamin...		Lus10023846 [exp]	1.7	0.8381
					Lus10027544 [exp]	3.7	0.8145
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10033029 [exp]	4.7	0.8079
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10041321 [exp]	5.5	0.8086
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10029950 [exp]	7.9	0.8103
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004302 [exp]	9.2	0.8360
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041226 [exp]	11.8	0.7782
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10009390 [exp]	13.5	0.8405
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10016187 [exp]	16.3	0.7765
AT1G10640			Pectin lyase-like superfamily ...		Lus10030886 [exp]	16.9	0.8528

Compare expression of checked genes

Lus10030604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.