Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60490 1194 / 0 PI3K, ATVPS34 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) AT5G14670 375 / 3e-123 ATARFA1B ADP-ribosylation factor A1B (.1) AT1G10630 372 / 4e-122 ATARFA1F ADP-ribosylation factor A1F (.1) AT3G62290 372 / 4e-122 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT1G70490 372 / 5e-122 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G23490 372 / 5e-122 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT2G47170 371 / 7e-122 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT2G15310 264 / 2e-81 ATARFB1A ADP-ribosylation factor B1A (.1) AT2G24765 247 / 1e-75 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT3G03120 241 / 3e-73 ATARFB1C ADP-ribosylation factor B1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030885 [exp] 1474 / 0 AT1G60490 1397 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10030884 [exp] 401 / 8e-133 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10013021 [exp] 387 / 3e-126 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10031436 [exp] 375 / 3e-123 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 376 / 6e-123 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10029144 [exp] 380 / 6e-121 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10013020 [exp] 313 / 5e-97 AT2G47180 336 / 3e-114 galactinol synthase 1 (.1) Lus10002817 [exp] 267 / 9e-83 AT2G15310 273 / 1e-94 ADP-ribosylation factor B1A (.1) Lus10009571 [exp] 242 / 2e-73 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G075100 [exp] 1244 / 0 AT1G60490 1388 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Potri.005G007400 [exp] 376 / 2e-123 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 376 / 2e-123 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.014G116500 [exp] 376 / 2e-123 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.013G005500 [exp] 375 / 2e-123 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.013G005600 [exp] 374 / 8e-123 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 374 / 8e-123 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.008G100000 [exp] 365 / 1e-119 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1) Potri.010G152600 [exp] 364 / 3e-119 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.005G142100 [exp] 336 / 1e-108 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family CL0154 [flax] [poplar] C2 PF00792 [flax] [poplar] PI3K_C2 Phosphoinositide 3-kinase C2 CL0016 [flax] [poplar] PKinase PF00454 [flax] [poplar] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase CL0020 [flax] [poplar] TPR PF00613 [flax] [poplar] PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain)
Representative CDS sequence Show only first row Show all	>Lus10030605 pacid=23140622 polypeptide=Lus10030605 locus=Lus10030605.g ID=Lus10030605.BGIv1.0 annot-version=v1.0 ATGAGCGGGAACGAGTTTCGGTTCTTCCTATCGTACGACATCAATCTCCCGGTGACCTTTCGAATCGAGAGATTGGAAGGATCCTTGCCTCCTGTCAAAT TGCCGGATTCAGGGATTGATTCCACGACGGAAGAGAGAAGAGCAGAGCTGTATGTTGAGTGTGTACTATGTATGGATGGAGCTCCCTTTGGTCTTCCAAT GCGAACAAGGCTGGAGACTAATGGACCCTCGGCATGCTGGAATGAACTCATCACATTGAGTACTAAATATAGGGACCTGAGTAGATACTCACAGCTCGCA TTGACGGTTTGGGATGTTTCACGTGGAAAAGACGAAGGTCTCATTGGTGGGGCAACTATTCCTCTTTTCAACAGTAAGTTGCAACTTAAAACGGGTAAGC TGAAGCTTAGGCTTTGGTCGGGAAAAGAAGCTGATGGATCATTTCCTACTACTACACCTGGAAAGGTCCCAAGGCACGAGCGTGGAGAATTGGAGCGTCT GGAGAAGCTTCTGAATAAATACGAAAGAGGACAGATTCAACGTGTCGATTGGCTCGATCGGCTTACGTTTAAATCAATGGAGAAAATTAAGGAACGTGAG AGCTCTAAAACTGGGAGTTCGCATCTATACTTGGTTGTTGATTTCTGCAGCTTTGAACATAGAGTTGTTTTCCAGGAATCAGGGGCAAATTTTGTATTCC CATCACCCATTTCTTCAACGAATGAACTTGTTACTGTGTGGGACCCTGAAATGGGTAAGATAAATCCTTCTGAGCACAAGCAACTGAAGTTAGCAAGGAG CTTAACACGAGGTATCATTGACAAGGATTTGAAGCCAAGCTCCAACGAAAGAAAGTCGATACAAAGAATTTTAAAATATCCACCAACACGATCATTGAGT GGTGATGAGAGACAACTCTTATGGAAATTCCGCTTTTCTTTGATGTCTGAAAAGAGGGCACTGACAAAGTTTCTCCGATGCGTGGAGTGGAGTGACCTTC AGGAAGCTAAACAAGCACTAGAGTTGATGGGAAAATGGGAAACTATTGACGTCTCTGATGCGCTTGAGCTTCTATCTCCTCTTTTTGAAAGTGAAGAGGT TCGTGCTTATGCTGTCACCGTTTTGGAGAGGGCTGATGATGAAGAACTCCAATGTTACTTGCTTCAACTAGTTCAGGCGCTAAGATTTGAAAGATCCGAT AAATCTCGTCTTTCTCAGTTCCTTGTGCAACGCTCATTAAACAACATTGAGTTGGCTAGCTTTCTACGGTGGTACGTTGCTGTGGAATTTTATGATCACG CTTATACCAAACGCTTTTATTGTACTCATGAGCTCCTAGAAGAGAATATGATGAAGTTGCCAGCTGGTCCAGACGGAGAAGAGGATGGATTCAAGTCGTG GCAAAGTTTAGTGCGCCAGACAGAATTGACAGCGCAGTTGTGTTCTATAACAAGAGATGTCAGAAATGTTCGAGGCAACACTCAGAAGAAAATCGAAAAG CTTAGACAGCTTCTTTCTGGGCTTCTCAGTGAACTCACTTATTTTGAGGAGCCGATAAGATCTCCACTGGCTCCATCTGTCCTCATTTCTGGGATTGTGC CATCGGAGTCATCAATATTCAAAAGTGCACTGCACCCCCTGCGCCTGACTTTCAGAACACAGAGTGGTGGAACTTCTATGATAATTTTTAAGAAGGGTGA TGATATTCGGCAAGACCAACTGGTTGTTCAGATGGTTTCTCTAATGGATAGGTTGCTTAAGTTGGAAAATCTTGATCTGCATTTGACTCCATATAAAGTC CTTGCTACTGGACAAGATGAGGGCATGCTCGAATTCATACCCTCACGAACTTTGGCTCAGCTTCAGTCAATAGCCTTTATTCCTCGACGTTCATCCATTT CGTTTGTCTTGGTTGTCAAAATCCAGATTCTCTCGGAGCATCGTAGCATTACAAGCTATTTACAGAAGTTTCATCCTGATGATCACGGGCCCTTTGGGAT CACTCCCACTTGTCTCGAGACGTTTATTAAAAGCTGTGCAGGCTATTCTGTCATCACATATATACTGGGGATCGGAGATAGACACTTGGACAATCTTCTG CTCAGAGACGACGGGCGCATGTTCCACGTCGACTTTGGTTATATTCTCGGCCGAGACCCTAAACCATTTCCCCCACCGATGAAGCTCTGCAAAGAGATGG TCGAGGCGATGGGTGGCGCAGAAAGCCAATACTACACCAGGTTCAAATCATATTGCTGTGAAGCATACAACATCCTCCGAAAATCAAGCAACCTAATCCT TAACCTTTTCCATCTGATGGCCGGTTCCAACATCCCCGACATCGCTTCCGATCCAGAGAAAGGCATACTCAAGCTTCGCCGAATCGTTGCAGCTCCAGGA GAAGTTCCGGCTGGACTTGGACGACGAAGCAGCCATCCATTTCTTCCAGGACCTGATCAACGAGAGCGTCAGCGCATTGTTCCCTCAAATGGTGGAGACT ATTCACCGTTGGGCTCAGTACTGGCGCTAGGTTCCAGCTTCTGCAAACATCAACGGTTAAAGACGTTACGGATGAAGACCACGGTGTCGAAAAAGGGATC AGAACATCAAAGGAAGAGAAAAATGGGGTTGACGTTCACTAAGCTCTTCAGCCGGCTGTTTGCCAAGAAGGAGATGAGGATTCTCATGGTTGGTCTCGAT GCGGCTGGTAAGACCACCATCTTGTACAAGCTCAAGCTCGGAGAGATCGTCACCACTATTCCCACCATCGGATTCAACGTGGAGACTGTTGAATACAAGA ACATTAGCTTCACAGTGTGGGATGTCGGGGGTCAAGACAAGATCCGTCCATTGTGGAGGCATTATTTCCAGAACACTCAGGGTCTCATCTTCGTTGTGGA CAGCAATGACAGAGATCGTGTTGTTGAGGCCAGAGATGAGTTGCACAGGATGTTGAATGAGGATGAGCTGAGAGATGCGGTGCTTCTTGTTTTCGCTAAC AAACAGGATCTGCCGAATGCAATGAACGCTGCTGAGATCACTGACAAGCTCGGCCTCCACTCCCTCCGTCAGCGTCACTGGTACATCCAGAGCACTTGTG CTACTTCTGGTGAGGGTCTTTACGAAGGTCTGGACTGGCTCTCCAACAACATCGCTAATAAGGTAACGAGAGACAATGGTTACGCAGAAATATGCTTTCG TCTGTCTCGAATGTGTTGTAAGAGTACTGATATCGGGATTCTTTGGTCTATTTGTTGCAGGCTTAAATCTGGGAGAGACGAGCAGCATTTTGTGGGATTG TCAGTTCTGGATGCAGGGGTGAATATTATCTAG
AA sequence Show only first row Show all	>Lus10030605 pacid=23140622 polypeptide=Lus10030605 locus=Lus10030605.g ID=Lus10030605.BGIv1.0 annot-version=v1.0 MSGNEFRFFLSYDINLPVTFRIERLEGSLPPVKLPDSGIDSTTEERRAELYVECVLCMDGAPFGLPMRTRLETNGPSACWNELITLSTKYRDLSRYSQLA LTVWDVSRGKDEGLIGGATIPLFNSKLQLKTGKLKLRLWSGKEADGSFPTTTPGKVPRHERGELERLEKLLNKYERGQIQRVDWLDRLTFKSMEKIKERE SSKTGSSHLYLVVDFCSFEHRVVFQESGANFVFPSPISSTNELVTVWDPEMGKINPSEHKQLKLARSLTRGIIDKDLKPSSNERKSIQRILKYPPTRSLS GDERQLLWKFRFSLMSEKRALTKFLRCVEWSDLQEAKQALELMGKWETIDVSDALELLSPLFESEEVRAYAVTVLERADDEELQCYLLQLVQALRFERSD KSRLSQFLVQRSLNNIELASFLRWYVAVEFYDHAYTKRFYCTHELLEENMMKLPAGPDGEEDGFKSWQSLVRQTELTAQLCSITRDVRNVRGNTQKKIEK LRQLLSGLLSELTYFEEPIRSPLAPSVLISGIVPSESSIFKSALHPLRLTFRTQSGGTSMIIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYKV LATGQDEGMLEFIPSRTLAQLQSIAFIPRRSSISFVLVVKIQILSEHRSITSYLQKFHPDDHGPFGITPTCLETFIKSCAGYSVITYILGIGDRHLDNLL LRDDGRMFHVDFGYILGRDPKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKLRRIVAAPG EVPAGLGRRSSHPFLPGPDQRERQRIVPSNGGDYSPLGSVLALGSSFCKHQRLKTLRMKTTVSKKGSEHQRKRKMGLTFTKLFSRLFAKKEMRILMVGLD AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN KQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKVTRDNGYAEICFRLSRMCCKSTDIGILWSICCRLKSGRDEQHFVGL SVLDAGVNII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030605 [exp]	0	1
AT1G05780			Vacuolar ATPase assembly integ...		Lus10033833 [exp]	1.4	0.9100
AT2G42005			Transmembrane amino acid trans...		Lus10022995 [exp]	1.4	0.9151
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10010623 [exp]	2.0	0.8950
AT3G02720			Class I glutamine amidotransfe...		Lus10010964 [exp]	2.4	0.8800
AT2G42005			Transmembrane amino acid trans...		Lus10001390 [exp]	3.0	0.9033
AT4G34215			Domain of unknown function (DU...		Lus10019817 [exp]	4.6	0.8559
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10010619 [exp]	8.4	0.8694
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10028367 [exp]	9.4	0.8710
AT3G62720		ATXT1, XXT1	XYG XYLOSYLTRANSFERASE 1, xylo...		Lus10037514 [exp]	11.6	0.8706
					Lus10017792 [exp]	12.0	0.8669

Compare expression of checked genes

Lus10030605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.