Plant FIBer expression Database

Lus10030608 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G23530 59 / 1e-10 unknown protein
AT1G74055 39 / 0.0009 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030881
[exp]
215 / 1e-70 ND 42 / 1e-04
Lus10013015
[exp]
63 / 4e-12 AT1G23530 51 / 4e-08 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G041600
[exp]
69 / 7e-15 AT1G23530 41 / 9e-05 unknown protein
PFAM info
Representative CDS sequence
>Lus10030608 pacid=23140585 polypeptide=Lus10030608 locus=Lus10030608.g ID=Lus10030608.BGIv1.0 annot-version=v1.0
ATGGCTAGTACTCTTCCACAACTACCATTACCTCAACCACAACAACCACCACCCCAATCCCAACAACCGGTCCTCGTGTACCCCAACGCAGCTTCGAGGG
ACCCGCACCAATCCGATTCCCACTCCAGCGGCTCGTTCGGCACGGTCTTCATAGTTCTAGCCGTGATCATCGTGGTCTCGGGGCTAGCCTGCTGCCTCGG
CCGGCTGTGCAACAGGCAACAACTCAAGAAGGACAGAAAGGATAGTCATAAGAGCAGCAAGAAGAGCAAAAACCAGCACAACTCGAAGGTGGGCCAGGGT
GACGACATCGAGTTTGGGCTTCCTCCTCCCATGTTTGGCCGGCCCATGGAAGGAGAGCGTGAAGGGCCTGTTGGGCCTCGTCAGAAGCAGCCCGGTGAGG
CTAACAATGGGCCGTATAATCCTTACGCTCCTTCTCCTTCTCAGCAGAAGGATGAACATGGAGATGAGCATGGAGGAGGTATGAAGATGATGAAGATGAT
GAATGGTGGTGAGCAGAAGAGAGAGTTTGGTAATGGTGGTAAGTTCGATCCTCGTTCGAAAGGCGGTGGGAAGTTAAACTATACCGTCATGGAGTTTCGG
GATGAGGAGTCTTCTCGTCCGAATATTAAAATCCGGGATCGACAAGCGAGATAA
AA sequence
>Lus10030608 pacid=23140585 polypeptide=Lus10030608 locus=Lus10030608.g ID=Lus10030608.BGIv1.0 annot-version=v1.0
MASTLPQLPLPQPQQPPPQSQQPVLVYPNAASRDPHQSDSHSSGSFGTVFIVLAVIIVVSGLACCLGRLCNRQQLKKDRKDSHKSSKKSKNQHNSKVGQG
DDIEFGLPPPMFGRPMEGEREGPVGPRQKQPGEANNGPYNPYAPSPSQQKDEHGDEHGGGMKMMKMMNGGEQKREFGNGGKFDPRSKGGGKLNYTVMEFR
DEESSRPNIKIRDRQAR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G23530 unknown protein Lus10030608
[exp]
0 1
AT5G46530 AWPM-19-like family protein (.... Lus10004587
[exp]
1.0 0.9833
AT5G04890 RTM2 RESTRICTED TEV MOVEMENT 2, HSP... Lus10028874
[exp]
1.4 0.9741
AT1G14730 Cytochrome b561/ferric reducta... Lus10019135
[exp]
1.7 0.9739
AT5G18970 AWPM-19-like family protein (.... Lus10001116
[exp]
3.5 0.9639
AT5G24620 Pathogenesis-related thaumatin... Lus10015591
[exp]
3.7 0.9623
Lus10025868
[exp]
3.9 0.9659
AT1G75260 oxidoreductases, acting on NAD... Lus10033210
[exp]
4.0 0.9662
AT2G27140 HSP20-like chaperones superfam... Lus10008426
[exp]
4.2 0.9600
AT4G27960 UBC9 ubiquitin conjugating enzyme 9... Lus10005072
[exp]
4.4 0.9467
AT4G16400 unknown protein Lus10039068
[exp]
6.0 0.9478

Lus10030608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.