Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10610 216 / 2e-65 bHLH bHLH090 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G16910 129 / 2e-32 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G57150 98 / 4e-23 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G21330 81 / 2e-17 bHLH bHLH022, DYT1 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29930 76 / 1e-15 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G28160 73 / 3e-14 bHLH ATFIT1, ATBHLH29, bHLH029, FIT1, ATBHLH029, FRU ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) AT1G12860 74 / 5e-14 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G17880 73 / 1e-13 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT3G26744 73 / 1e-13 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT1G01260 72 / 2e-13 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030880 [exp] 664 / 0 AT2G16910 224 / 7e-69 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10036068 [exp] 133 / 4e-37 AT5G57150 79 / 3e-18 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10006951 [exp] 79 / 1e-16 AT5G57150 243 / 2e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10007618 [exp] 78 / 1e-16 AT4G21330 141 / 2e-42 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018395 [exp] 79 / 3e-16 AT4G21330 131 / 1e-37 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10026278 [exp] 81 / 5e-16 AT2G16910 233 / 2e-69 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042395 [exp] 79 / 2e-15 AT2G16910 323 / 1e-103 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10016151 [exp] 73 / 6e-14 AT2G28160 235 / 1e-75 ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) Lus10000037 [exp] 69 / 2e-13 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G189600 [exp] 150 / 1e-40 AT1G10610 223 / 3e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G041500 [exp] 116 / 1e-30 AT2G16910 109 / 7e-28 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G136300 [exp] 120 / 2e-29 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G141800 [exp] 94 / 9e-22 AT5G57150 256 / 6e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074900 [exp] 84 / 3e-18 AT5G57150 200 / 3e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.004G029800 [exp] 82 / 5e-18 AT4G21330 153 / 8e-47 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G141600 [exp] 78 / 4e-16 AT5G57150 191 / 2e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G141500 [exp] 74 / 7e-15 AT5G57150 214 / 1e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.009G005600 [exp] 74 / 2e-14 AT2G28160 236 / 8e-76 ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) Potri.014G099700 [exp] 75 / 3e-14 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10030609 pacid=23140653 polypeptide=Lus10030609 locus=Lus10030609.g ID=Lus10030609.BGIv1.0 annot-version=v1.0 ATGGCGGGAGGATTGGAGAGCGTGGTCGCATTACTCCGTCCGATCGTCGATTGCAGAGCTTGGGATTACTGCGTTGTCTGGAAGTTAACCCCTGTCCCTT CCAGGTTCCTGGAGTGGATTGGTTGCTGCTGCAGCGGCGCAATGGACGGTGGCAGCTTCCTAACTGATACGATTGTTAAGCAAGAGGCTGGAGCAGAAGC CATCGGTCCGTTTTGCAGAGATTTGAATTCCAAGCATCCGATTGGCTCAATGGCTTGTCACGCTCTTGCTTGCTTTCCCTCCTTCCTACCTTTGTATCCT GGAATTCATGGAGCTGTTGCAATTTCAAACGAATCAATTTGGATGCACTCTGATGCCCAAACCTATACTGAATCAGGTGAAACGCGTGTTCTTATCCCGG TAATCGGTGGCCTTATTGAGCTTTTTGCAGCCAAACATGTTGATCAAGATGATATGATTGTTGACTTGATTTTGACTCACTGCAACACCCTCCTATATGG AATGATCATGAAGGAACAGAGTTTGGATCCCTCGAATTCAAACGAGTTTGAAGAATTGTGGCCTCCTTCCTACTCATCGAGCATTTCTATCCCTTCCAAT GTGTATCCATTGTTGGATAGAAGTTATTCTGCATTATCTGCAAGTGCAGCAGCTAGCTCAAGCAAGCCACCCAAGTTGACTGACAACTCAGTGAACACAA AGGTCGCGAAATCTAACGGGAAACCAGCCAGGAAACGACCCACCTATAAGAATCTTATCCTGGAGAGGAACAGGAGAAACAAGATTCAACAGCGGCTCTT CGCCCTACGCGCCTTGGTCCCCAAGATTTCCAAGATGGACAAAGCATCAATCATCGGAGATGCAGTCGACTACATCATCGAGTTACAGAACGAGAGGAAG AGACTCGAAGAGGAGCTTGACCAGCTCGAAGAAGAAGAGGAAATTCGAAAAGTTGACTCGGAACGAACCAAAAACATCAGCAGCAACCTCCCTACTGCTG TTGTTAAAACTGAGATGATCGAGGCCGATCTCGACGTGATCACCATTGGTCATAGAGAGTACCTGATCAGGCTCTTGTACAACCAGAGGAAAGGAGGGCT AGTGAAGCTGATTGAGACTCTGAGTTCATTAGGCCTTCAAGTTGTTGATGCCAACATTACAAACCTCCGTGGCAGCGTCTTACACATTCTCCGGGTTCAG GGAAACGAGGCGATAGCACAGTGGAAACTGAGGGGCAGGTTGGTAAAGCTAATATGA
AA sequence Show only first row Show all	>Lus10030609 pacid=23140653 polypeptide=Lus10030609 locus=Lus10030609.g ID=Lus10030609.BGIv1.0 annot-version=v1.0 MAGGLESVVALLRPIVDCRAWDYCVVWKLTPVPSRFLEWIGCCCSGAMDGGSFLTDTIVKQEAGAEAIGPFCRDLNSKHPIGSMACHALACFPSFLPLYP GIHGAVAISNESIWMHSDAQTYTESGETRVLIPVIGGLIELFAAKHVDQDDMIVDLILTHCNTLLYGMIMKEQSLDPSNSNEFEELWPPSYSSSISIPSN VYPLLDRSYSALSASAAASSSKPPKLTDNSVNTKVAKSNGKPARKRPTYKNLILERNRRNKIQQRLFALRALVPKISKMDKASIIGDAVDYIIELQNERK RLEEELDQLEEEEEIRKVDSERTKNISSNLPTAVVKTEMIEADLDVITIGHREYLIRLLYNQRKGGLVKLIETLSSLGLQVVDANITNLRGSVLHILRVQ GNEAIAQWKLRGRLVKLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Lus10030609 [exp]	0	1
AT4G31680	B3	REM8	Transcriptional factor B3 fami...		Lus10010080 [exp]	2.4	0.8826
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006352 [exp]	5.5	0.8256
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010468 [exp]	17.6	0.8630
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10011875 [exp]	24.0	0.7963
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10029360 [exp]	25.9	0.8031
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10027327 [exp]	30.7	0.7465
AT5G14130			Peroxidase superfamily protein...		Lus10012540 [exp]	32.8	0.7486
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10041811 [exp]	41.6	0.8226
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Lus10009427 [exp]	44.6	0.7832
AT5G43350		PHT1;1, ATPT1	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10021191 [exp]	49.9	0.7899

Compare expression of checked genes

Lus10030609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.