Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23540 279 / 2e-83 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G70460 219 / 2e-61 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G10620 213 / 2e-59 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G55200 201 / 2e-55 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G13690 196 / 3e-53 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G68690 195 / 6e-53 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT5G38560 187 / 2e-50 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G26150 187 / 4e-50 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT5G56790 184 / 2e-49 Protein kinase superfamily protein (.1) AT4G02010 184 / 2e-49 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030879 [exp] 726 / 0 AT1G70460 542 / 0.0 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) Lus10013013 [exp] 445 / 7e-146 AT1G70460 596 / 0.0 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) Lus10029151 [exp] 305 / 1e-96 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10013014 [exp] 299 / 5e-94 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10022129 [exp] 229 / 5e-65 AT3G24550 474 / 3e-159 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10003066 [exp] 198 / 5e-54 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10014319 [exp] 189 / 5e-53 AT3G24550 456 / 3e-156 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10006148 [exp] 194 / 1e-52 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10034082 [exp] 194 / 1e-52 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G189700 [exp] 253 / 7e-74 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.010G041401 [exp] 235 / 3e-73 AT1G70460 258 / 2e-82 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) Potri.007G027000 [exp] 248 / 1e-72 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.005G124400 [exp] 246 / 2e-72 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.010G132900 [exp] 199 / 3e-54 AT1G26150 605 / 0.0 proline-rich extensin-like receptor kinase 10 (.1) Potri.008G111600 [exp] 196 / 2e-53 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 193 / 2e-52 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 190 / 3e-51 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.003G034900 [exp] 189 / 5e-51 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G153600 [exp] 188 / 6e-51 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10030610 pacid=23140612 polypeptide=Lus10030610 locus=Lus10030610.g ID=Lus10030610.BGIv1.0 annot-version=v1.0 ATGACAAGCTCGGCGGAGACGCCGGGCTATATCAAGCGGCGATTTTCGGTGGTTTCCAAGGCGGAGAATTCCACGGAAGGTTCGGGTTCGGAAAATTCAT CACCTCCAGCACCTCCGGCTGAGGGCTCCAGTACTACTCCGCCTGCCGGAGAAGGCGAAGGATCGGGTACCGGAGGTTCTCCTCCTACCGACAATAATAG CGGCAGCGAAGAAAACAATAACAACGAGAATAATAACAATAACAACAACGAAGGTTCGGGAAATGCAGCGCCGTCACCTCCGCCGCATGAAGAATCACAG GCCGGAAACACCACCTCAGCGGAGTCGCCGCCATCGCCGCCGTCACCGCCTCCTTCGACTCCGACGCCCAGCACCCCACCGAAAAATCCGCCAGCTGAGC AGAACTCAGGGTCGAATTCCAATTCCAACTCTAATTCGAACAAAAAAAATTCGCCTTCTTCCCCTTCCCCTCCTTCAAACGAACAAAACGAATCTCCGGA GTCAAGCAGCGACGGCGGCGGAGAAAAGTCCCCTAAACGAAAATCACCACCGGAACAATCGGGGGAGGAAGAATCCAATCAAAACGAAGAATCCACTTCC GATAATAACAATAACGATAACGACTCTCCTAATGCCCCGAAGAAAGAGAGACCTGTTACTCCGGGGATACTGCCGCAGCAGCAGTCGGCGGCTGCTGCCG GTGGTGCGGTCAATCCTCCTCCGGCAGCGATCGGGTCTCCTCCTGGTCAGGCGGGAACCGTGAATTCCCCCGTCTCCGGGGGGAATGATCAACCTGGCCG TTCGTCGTCGTCTCAAGGTTCGAGCAACTCGGGGTCGAATTCGACTAATTCGAACAAGGGTTCGAGTAATGGGAATACGGCCGTGATTGTGGGGAGTGCA GTGGTGGTGAGTGTGATACTTATTGCGTTGATCGTGATCATTATTGCGACGAGGAAGAAGAAGAAGACGCCTCGTTATGCTACTCCTCCTTACATGACTC CTCCCAATAATTTCTCTGCTCTGCAACAGTCAGACCCATATTACTACGGACAAGGTCCACATTCAATGGGATACAACTCCGACGGCCAAAACCACTCCTA CGGCTCACAACACTATTCCGGTGCATTCGGAACTAGTGGGAGCAACGGAGGCAAATATTCGAGTCCGGATTCCGGACTAATGGGCGGAGGCAAGTCCTTC TTCAGCCACGAAGAAGTGATGGAAATGACGAAAGGATTCGCTCGCGAGAACATAATCGGAGAAGGAGGTTTCGGGTACGTGTTCAAAGGTTGCAAGCCGG ACGGGAAGTTGGTTGCCGTCAAGCAACTCAAGGCCGGGAGTGGACAAGGTGACCGCGAATTCAAGGCCGAAATCGAGATCATTAGTCGGGTCCACCATCG CCACCTCGTGTCCTTGGTTGGTTACAGCATGTCTGATCAGCAGAGGCTGTTGATCTACGAGTTTCTTCCCAACAACACTCTTGAGTATCACTTGCATGGT TGCAGACTTCGGTCTTGCGAGATTGAACGATACGACTCAGACCCATGTGTCAACTCGTGTGATGGGAACATTTGGAGTGGGAAGCTAACTGACAGATCCG ATGTCTATTCATTTGGGGTAGTTCTTCTTGAGCTTATAACTGGGAAGAAGCCTGTCGATTCAACTCGTCCCCTCGGAGATGAAAGCTTGGTTGAATGGGC TCGCCCGCATCTCATGCACGCCATGGACAGCGGAGACCTCGACGAGCTAGTCGACCCGCGGCTCGAGAAGCGCTATGTCGAGGCGGAACTCGTTAGGATG ATCGAGACGGCTGCTGCTTGTATCCGCCACAATGCTCCCAAACGGCCCAGAATGGTTCAGGTAGTTAGAGCGCTGGACAGCGACGAATCGAGGGATCTAA CGAACGGAATGAAGTATGGACAGAGCACAATGTACAACTCGGGGCAGTACAACGAAGAGATCATGAAGTTTCGGAGGATGGCGTTGGGTTCGGACGACAG CGGAGAGTTTGGTTACACTAGTGGAGGAGGATACAACTCGAGAGAGATGTCTCACGGCCCGCCGACTTCGACAGGGGACTACACCAGTAGTGGGGAATTG GAGACTAGAGCCATTAACAGACCTCCAAGAAACTGGTAA
AA sequence Show only first row Show all	>Lus10030610 pacid=23140612 polypeptide=Lus10030610 locus=Lus10030610.g ID=Lus10030610.BGIv1.0 annot-version=v1.0 MTSSAETPGYIKRRFSVVSKAENSTEGSGSENSSPPAPPAEGSSTTPPAGEGEGSGTGGSPPTDNNSGSEENNNNENNNNNNNEGSGNAAPSPPPHEESQ AGNTTSAESPPSPPSPPPSTPTPSTPPKNPPAEQNSGSNSNSNSNSNKKNSPSSPSPPSNEQNESPESSSDGGGEKSPKRKSPPEQSGEEESNQNEESTS DNNNNDNDSPNAPKKERPVTPGILPQQQSAAAAGGAVNPPPAAIGSPPGQAGTVNSPVSGGNDQPGRSSSSQGSSNSGSNSTNSNKGSSNGNTAVIVGSA VVVSVILIALIVIIIATRKKKKTPRYATPPYMTPPNNFSALQQSDPYYYGQGPHSMGYNSDGQNHSYGSQHYSGAFGTSGSNGGKYSSPDSGLMGGGKSF FSHEEVMEMTKGFARENIIGEGGFGYVFKGCKPDGKLVAVKQLKAGSGQGDREFKAEIEIISRVHHRHLVSLVGYSMSDQQRLLIYEFLPNNTLEYHLHG CRLRSCEIERYDSDPCVNSCDGNIWSGKLTDRSDVYSFGVVLLELITGKKPVDSTRPLGDESLVEWARPHLMHAMDSGDLDELVDPRLEKRYVEAELVRM IETAAACIRHNAPKRPRMVQVVRALDSDESRDLTNGMKYGQSTMYNSGQYNEEIMKFRRMALGSDDSGEFGYTSGGGYNSREMSHGPPTSTGDYTSSGEL ETRAINRPPRNW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Lus10030610 [exp]	0	1
AT4G27790			Calcium-binding EF hand family...		Lus10022381 [exp]	3.3	0.8532
AT5G15240			Transmembrane amino acid trans...		Lus10005239 [exp]	5.5	0.8168
AT4G36210			Protein of unknown function (D...		Lus10010626 [exp]	6.9	0.7720
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10011523 [exp]	8.8	0.8112
AT5G64500			Major facilitator superfamily ...		Lus10002935 [exp]	10.4	0.8279
					Lus10028391 [exp]	17.3	0.8373
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10016351 [exp]	18.0	0.7719
					Lus10017216 [exp]	20.9	0.7181
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10027228 [exp]	24.0	0.7778
AT5G67140			F-box/RNI-like superfamily pro...		Lus10024178 [exp]	26.7	0.7727

Compare expression of checked genes

Lus10030610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.