Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23550 215 / 2e-67 SRO2 similar to RCD one 2 (.1) AT1G70440 198 / 3e-61 SRO3 similar to RCD one 3 (.1) AT5G62520 172 / 6e-51 SRO5 similar to RCD one 5 (.1.2) AT3G47720 140 / 1e-38 SRO4 similar to RCD one 4 (.1) AT1G32230 140 / 5e-37 ATP8, CEO1, RCD1, AtRCD1 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) AT2G35510 103 / 6e-24 SRO1 similar to RCD one 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030878 [exp] 593 / 0 AT1G23550 223 / 1e-70 similar to RCD one 2 (.1) Lus10029152 [exp] 337 / 1e-114 AT1G23550 219 / 4e-69 similar to RCD one 2 (.1) Lus10013012 [exp] 333 / 7e-113 AT1G23550 218 / 1e-68 similar to RCD one 2 (.1) Lus10030991 [exp] 105 / 1e-24 AT1G32230 376 / 2e-123 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) Lus10035390 [exp] 96 / 3e-21 AT2G35510 352 / 5e-114 similar to RCD one 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G231100 [exp] 221 / 2e-69 AT1G23550 207 / 2e-64 similar to RCD one 2 (.1) Potri.012G081100 [exp] 218 / 4e-68 AT5G62520 243 / 2e-78 similar to RCD one 5 (.1.2) Potri.015G076500 [exp] 213 / 1e-65 AT5G62520 251 / 2e-81 similar to RCD one 5 (.1.2) Potri.018G055100 [exp] 198 / 1e-60 AT1G23550 208 / 5e-65 similar to RCD one 2 (.1) Potri.006G231500 [exp] 194 / 3e-59 AT1G23550 219 / 2e-69 similar to RCD one 2 (.1) Potri.006G231600 [exp] 191 / 6e-58 AT1G23550 185 / 6e-56 similar to RCD one 2 (.1) Potri.002G112300 [exp] 146 / 1e-39 AT2G35510 185 / 4e-52 similar to RCD one 1 (.1) Potri.003G096700 [exp] 123 / 5e-31 AT1G32230 451 / 4e-152 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) Potri.001G137200 [exp] 120 / 5e-30 AT1G32230 479 / 6e-163 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) Potri.005G149701 [exp] 84 / 1e-19 AT2G35510 81 / 4e-19 similar to RCD one 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12174 [flax] [poplar] RST RCD1-SRO-TAF4 (RST) plant domain
Representative CDS sequence Show only first row Show all	>Lus10030611 pacid=23140769 polypeptide=Lus10030611 locus=Lus10030611.g ID=Lus10030611.BGIv1.0 annot-version=v1.0 ATGGCCGCAATAGTTGCCCCAGCGGTGTACGAGGAGGAGCAATCCGCGAGTTCGATCGTCGAGGATGACGATATCTTGAAGCCGGATTACGACTCCGACA AGTTTACCGGCGATTCTCTCCATGCCAAAGGAGTCCGGGGCGGGTTCGGGGATTTTACTCGCGTCGGATTCGCTCCTCTGCCGGAGGATGCTGTACAGCA CTCGAGGATCGCGAAGCACTTTCGCGACGGGTTGGGGAAACGCGCCGCCGGTGATGATGCTGTGACGGTGACGGCGGTGCATAGGAATCTGATCTCGTCT CCGGCCGCTAGGGCTAGGTTCATCTCGTTTAGGATTCACGAGAAGGCGGTGGCGGATAAGTGCGGCGGCGTTTCCAACGCTCGGTTCGCCTGGTACGGCG GCTCACGGGATGAGATCTGCAAGATCTTGAGCTTCGGATTCAGCCGATGCACCGGCGGCGGAGGAGGATGGAACGGTCGACAAGTTACACGCGGCGTCGG CGTTCATCTATCGTCAATTGCGTTTCCCGCTGATTGCTTGGAAGCGGCGACCGTTGACCAGCACGGGACGAAGCACTTGCTTCTCTGCCGAGTTTTGCTC GGTCAAATGGAAGCAATCCCTGCTGGCTCTAGCCAATCAACTCCAAGCTCCGTTGAATTCGATACCGGAGTTGACGATCTGGCCAATCCGAGGAGATTCG TCGTCTGGAGTTCGTTCATGAACTCGCACATTTTCCCAGTATGCGTTGTCAGCTTCAAGGATCCAGCTAGTGGCATTGAGTCGATAAGAGAGGCGCCACC ATTGCGGGGTGGTTGTAGGAGGCCCAGATCGCCGTGGATGAGCTTTCCAGCTCTGTTGAGCGTCCTCTCCGAGGTGTTGGATCGACCCGCAAAGTTTATC ATTTCCAAGAGTTACGATGACTTCAAGCGACAGAGGATTACCAGAGAGCAACTGGTGAGAAAATTAAGGCAGCTCGTTGGGGATGAACTCTTGGCTTCAG TTATCAAATCTCACCAGAAGGTATTATTTTTCCCCCAGTTCTGTAAGAGCTTTCAAATTGTCCTTCCATGA
AA sequence Show only first row Show all	>Lus10030611 pacid=23140769 polypeptide=Lus10030611 locus=Lus10030611.g ID=Lus10030611.BGIv1.0 annot-version=v1.0 MAAIVAPAVYEEEQSASSIVEDDDILKPDYDSDKFTGDSLHAKGVRGGFGDFTRVGFAPLPEDAVQHSRIAKHFRDGLGKRAAGDDAVTVTAVHRNLISS PAARARFISFRIHEKAVADKCGGVSNARFAWYGGSRDEICKILSFGFSRCTGGGGGWNGRQVTRGVGVHLSSIAFPADCLEAATVDQHGTKHLLLCRVLL GQMEAIPAGSSQSTPSSVEFDTGVDDLANPRRFVVWSSFMNSHIFPVCVVSFKDPASGIESIREAPPLRGGCRRPRSPWMSFPALLSVLSEVLDRPAKFI ISKSYDDFKRQRITREQLVRKLRQLVGDELLASVIKSHQKVLFFPQFCKSFQIVLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10030611 [exp]	0	1
AT5G03230			Protein of unknown function, D...		Lus10015087 [exp]	1.4	0.9054
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10018142 [exp]	3.0	0.9301
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10040964 [exp]	4.9	0.8840
AT2G45620			Nucleotidyltransferase family ...		Lus10009310 [exp]	5.6	0.8691
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10012850 [exp]	8.8	0.9043
AT5G55530			Calcium-dependent lipid-bindin...		Lus10003765 [exp]	9.8	0.8983
AT3G29010			Biotin/lipoate A/B protein lig...		Lus10017321 [exp]	11.7	0.8493
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Lus10037075 [exp]	12.2	0.9007
AT5G05700		ATATE1, DLS1, A...	DELAYED LEAF SENESCENCE 1, arg...		Lus10004392 [exp]	13.9	0.8688
AT1G08710			F-box family protein (.1.2)		Lus10009519 [exp]	14.5	0.8847

Compare expression of checked genes

Lus10030611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.