Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70420 130 / 2e-36 Protein of unknown function (DUF1645) (.1) AT1G23710 125 / 2e-34 Protein of unknown function (DUF1645) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030876 [exp] 320 / 8e-111 AT1G70420 147 / 5e-43 Protein of unknown function (DUF1645) (.1) Lus10029153 [exp] 174 / 4e-53 AT1G70420 159 / 1e-47 Protein of unknown function (DUF1645) (.1) Lus10013011 [exp] 169 / 2e-51 AT1G70420 159 / 1e-47 Protein of unknown function (DUF1645) (.1) Lus10002380 [exp] 47 / 9e-06 AT1G70420 78 / 1e-16 Protein of unknown function (DUF1645) (.1) Lus10042116 [exp] 45 / 2e-05 AT1G70420 61 / 2e-11 Protein of unknown function (DUF1645) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G041300 [exp] 109 / 1e-28 AT1G23710 169 / 5e-51 Protein of unknown function (DUF1645) (.1) Potri.012G081000 [exp] 78 / 1e-16 AT1G23710 104 / 5e-26 Protein of unknown function (DUF1645) (.1) Potri.015G076400 [exp] 77 / 3e-16 AT1G23710 91 / 6e-21 Protein of unknown function (DUF1645) (.1) Potri.009G102101 [exp] 59 / 8e-10 AT1G23710 74 / 4e-15 Protein of unknown function (DUF1645) (.1) Potri.008G156901 [exp] 52 / 6e-08 AT1G23710 57 / 1e-09 Protein of unknown function (DUF1645) (.1) Potri.018G096600 [exp] 49 / 7e-07 AT1G23710 76 / 2e-16 Protein of unknown function (DUF1645) (.1) Potri.018G096400 [exp] 43 / 3e-05 AT1G23710 58 / 9e-11 Protein of unknown function (DUF1645) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07816 [flax] [poplar] DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence Show only first row Show all	>Lus10030612 pacid=23140541 polypeptide=Lus10030612 locus=Lus10030612.g ID=Lus10030612.BGIv1.0 annot-version=v1.0 ATGACTTCAATCGTCGCTCCGATTCCCAGCTGTTCCGACGCCGACAGCAAGTTCGTCAAGGAGTTCTGGCTCAAGCTCAAGCTCATCGAGGAACACGAAG AAGTAGTTATAGAAGAAGAAGAAGAAAAAGAAGAAGAATTGCATGAAGAATGGCATAACCCAGATGGAGACGACGACGAATCGGAACTCGAGGAAGAAGA GGATGACGACGAATTCAGTTTCGCCAGAGCATTCGGCGATGGAGACATAATAACCGCCGACGAGGCCTTCCTCAACGGCCAGATCCGGCCGGTCTTCCCT CTCTTCAACCGGGATCTCCTCCTTGCAGAGGAGGGGATCCAGCAGCTGCCGGAGGAAGGGTTGTACTGCGAATGGGGAGGGAAAACAGAGTCATCGTCGG CGACGGCGACGGAGGCGGGTTCGCCGGAGTTTGTACCCAAGAAGAGCAACTCCACTGGATTCTCCAAGCTGCGGAGGTTTAGAGAGCTTGTGTTGAGGAG TAACAGCGACGGGAAGGATAAATTCGTCTTTCTACATCACCACCACCACCACAGTATTAGTAAAGGGGGGACTGCTCCCGCCGCCGGTGATGAAGGAAAG AAGTTGGCTTCGCCGCCGGAGAAGAAAAGCGCGGTGAAGTTGGTGATGAAGAAGAAGAAGGGCGAAACGACGTCGGCGTTGGAGAAGATGTACGCGAGGA GGAAGAAGGAAGAAGGGAGTAAACAGAGAGTGTCGTATCTACCGTACAAGCAAGTCGGATTCTTTGCTAGCGTTAATGGCTTGAGCAAGAATGTTCATCC TTACTGA
AA sequence Show only first row Show all	>Lus10030612 pacid=23140541 polypeptide=Lus10030612 locus=Lus10030612.g ID=Lus10030612.BGIv1.0 annot-version=v1.0 MTSIVAPIPSCSDADSKFVKEFWLKLKLIEEHEEVVIEEEEEKEEELHEEWHNPDGDDDESELEEEEDDDEFSFARAFGDGDIITADEAFLNGQIRPVFP LFNRDLLLAEEGIQQLPEEGLYCEWGGKTESSSATATEAGSPEFVPKKSNSTGFSKLRRFRELVLRSNSDGKDKFVFLHHHHHHSISKGGTAPAAGDEGK KLASPPEKKSAVKLVMKKKKGETTSALEKMYARRKKEEGSKQRVSYLPYKQVGFFASVNGLSKNVHPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70420			Protein of unknown function (D...		Lus10030612 [exp]	0	1
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10034425 [exp]	1.7	0.9901
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	2.4	0.9894
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10034426 [exp]	3.2	0.9898
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10011310 [exp]	3.7	0.9835
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10017981 [exp]	5.9	0.9869
AT4G14746			unknown protein		Lus10039368 [exp]	6.2	0.9640
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10016962 [exp]	6.6	0.9870
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10035736 [exp]	7.3	0.9812
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10023824 [exp]	7.7	0.9842
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10015062 [exp]	7.7	0.9811

Compare expression of checked genes

Lus10030612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.