Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10600 253 / 3e-85 AMSH2 associated molecule with the SH3 domain of STAM 2 (.1.2.3) AT1G48790 215 / 8e-67 AMSH1 associated molecule with the SH3 domain of STAM 1 (.1) AT4G16144 214 / 1e-66 AMSH3 associated molecule with the SH3 domain of STAM 3 (.1) AT5G23540 44 / 5e-05 Mov34/MPN/PAD-1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030875 [exp] 434 / 4e-156 AT1G10600 311 / 2e-108 associated molecule with the SH3 domain of STAM 2 (.1.2.3) Lus10036454 [exp] 206 / 3e-63 AT4G16144 645 / 0.0 associated molecule with the SH3 domain of STAM 3 (.1) Lus10009006 [exp] 201 / 6e-61 AT1G48790 589 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Lus10009634 [exp] 133 / 1e-35 AT1G48790 536 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Lus10035470 [exp] 49 / 2e-06 AT5G23540 601 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10031085 [exp] 48 / 2e-06 AT5G23540 599 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10042663 [exp] 45 / 3e-05 AT5G23540 616 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10021746 [exp] 45 / 3e-05 AT5G23540 618 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G041200 [exp] 269 / 1e-91 AT1G10600 256 / 3e-87 associated molecule with the SH3 domain of STAM 2 (.1.2.3) Potri.010G141100 [exp] 218 / 6e-68 AT4G16144 697 / 0.0 associated molecule with the SH3 domain of STAM 3 (.1) Potri.015G045800 [exp] 207 / 7e-64 AT1G48790 581 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Potri.002G127900 [exp] 47 / 6e-06 AT5G23540 567 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.014G032900 [exp] 47 / 6e-06 AT5G23540 563 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF01398 [flax] [poplar] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Representative CDS sequence Show only first row Show all	>Lus10030613 pacid=23140620 polypeptide=Lus10030613 locus=Lus10030613.g ID=Lus10030613.BGIv1.0 annot-version=v1.0 ATGGATCCTGAATCTTGCTTATGCACACACAAATCAAGGCCTGACCTTTTCCACCACATGAAAGTTCACGCTTTTACTCAATCCTCTCCTTCCCCGGTAC TCTCATGCGTCGAGAAAGCTCCCAGGTGTGCTCAAATTTCACTGGTTCCAGCTGCTGATGTAGATGAATCTTCAAGCAACGATCGAGCTGCACCGGATAT TCGTGAAGTTCATATATTAGTAAAGGGAATGACAAGTTTATTGTGCTGGTCAGCACGGTTGATGGAGGATTTCCTAGAGCTGGCTAAAGAAAACACAGAA GGCTGTGGTGTACTTGGTGCTTTCCTTGAAAGCGGGACGTATTACGTGACAACTCTGATAATACCGAAGCAAGAGGCCACTTTCAACTCTTGTGAAGCTA AGAGGGAGGAGGGGTACTTTACGATACAGAATGACTGGTCTCTTTCCCCCGTTGGATGGATTCACACACATCCTTCTCAGAGTTGCTTCATGTCATCAAC TGATCTGCACACTCATTACTCATATCAGTCAATGATACCAGAGGCATTCGCAATCGTCATGGCTCCAACCGATACATCAAGAAGTTACGGTATATTCCGG ATATCAGATCCTGGAGGCATGTGCATTCTCAGACAGTGCCAAGAGAAGGGATTCCACACTCACGATGAACCAGCAGACGGGACCCCAATTTACCAAAACT GCTCTAACGTCTACATCAACTCCAATCTGAGGTCGCTTCCTTTGACCATCATCCGGTTGGACAAATAA
AA sequence Show only first row Show all	>Lus10030613 pacid=23140620 polypeptide=Lus10030613 locus=Lus10030613.g ID=Lus10030613.BGIv1.0 annot-version=v1.0 MDPESCLCTHKSRPDLFHHMKVHAFTQSSPSPVLSCVEKAPRCAQISLVPAADVDESSSNDRAAPDIREVHILVKGMTSLLCWSARLMEDFLELAKENTE GCGVLGAFLESGTYYVTTLIIPKQEATFNSCEAKREEGYFTIQNDWSLSPVGWIHTHPSQSCFMSSTDLHTHYSYQSMIPEAFAIVMAPTDTSRSYGIFR ISDPGGMCILRQCQEKGFHTHDEPADGTPIYQNCSNVYINSNLRSLPLTIIRLDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10600		AMSH2	associated molecule with the S...		Lus10030613 [exp]	0	1
AT4G32480			Protein of unknown function (D...		Lus10011174 [exp]	4.6	0.9698
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Lus10015015 [exp]	5.1	0.9474
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10016858 [exp]	7.3	0.9668
AT1G21000			PLATZ transcription factor fam...		Lus10000952 [exp]	8.3	0.9655
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10000441 [exp]	8.5	0.9637
AT4G19160			unknown protein		Lus10025855 [exp]	9.0	0.9624
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10027045 [exp]	9.2	0.9643
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10022282 [exp]	9.9	0.9603
AT1G49770	bHLH	ZOU, RGE1, bHLH...	ZHOUPI, RETARDED GROWTH OF EMB...		Lus10018723 [exp]	10.0	0.9641
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10036324 [exp]	11.0	0.9527

Compare expression of checked genes

Lus10030613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.