Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70410 351 / 5e-123 ATBCA4 beta carbonic anhydrase 4 (.1.2.3) AT5G14740 343 / 9e-120 BETACA2, CA18, CA2 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) AT3G01500 335 / 1e-116 SABP3, ATBCA1, CA1, ATSABP3 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) AT1G23730 330 / 7e-115 ATBCA3 BETA CARBONIC ANHYDRASE 3, beta carbonic anhydrase 3 (.1) AT4G33580 188 / 3e-58 ATBCA5 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) AT1G58180 154 / 7e-46 ATBCA6 A. THALIANA BETA CARBONIC ANHYDRASE 6, beta carbonic anhydrase 6 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030874 [exp] 469 / 9e-170 AT5G14740 319 / 8e-111 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Lus10022235 [exp] 325 / 4e-111 AT3G01500 460 / 3e-163 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Lus10016443 [exp] 254 / 1e-83 AT5G14740 298 / 4e-101 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Lus10008780 [exp] 238 / 3e-77 AT3G01500 357 / 1e-122 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Lus10015833 [exp] 187 / 4e-57 AT4G33580 306 / 2e-103 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10020415 [exp] 184 / 3e-54 AT1G15820 379 / 9e-130 light harvesting complex photosystem II subunit 6 (.1) Lus10009274 [exp] 162 / 3e-48 AT4G33580 281 / 2e-94 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10015892 [exp] 117 / 2e-31 AT4G33580 205 / 3e-65 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G041100 [exp] 397 / 5e-141 AT5G14740 392 / 4e-138 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.008G189800 [exp] 374 / 7e-132 AT5G14740 375 / 5e-133 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.001G348900 [exp] 339 / 5e-117 AT3G01500 429 / 2e-151 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Potri.015G075902 [exp] 281 / 3e-95 AT5G14740 304 / 1e-104 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.015G076000 [exp] 280 / 1e-94 AT5G14740 303 / 4e-104 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.017G044700 [exp] 221 / 8e-71 AT4G33580 339 / 8e-117 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.007G114600 [exp] 203 / 6e-64 AT4G33580 335 / 4e-115 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.005G156600 [exp] 191 / 4e-59 AT4G33580 303 / 1e-102 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00484 [flax] [poplar] Pro_CA Carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Lus10030614 pacid=23140666 polypeptide=Lus10030614 locus=Lus10030614.g ID=Lus10030614.BGIv1.0 annot-version=v1.0 ATGGCGGAGCAATCGTACCAGGAAGCCATCGATGGATTGACGAAGCTGCTCAGTGAGAAGGCTGATCTCGGGAGCGTCGCCGCCGCGAAAATCAAGCAGT TGACGGCTGAGCTGGAGGGTGGCGTCGGCGGCAAGGACTCCGACCCAGTCCAAAGGCTGAAGACCGGGTTCCATACGTTCAAGACTGAGAAATATGAGAA GAATCCTGATCTTTACGAGCCTTTGAAGAAAGGGCAATGGCCTAAGTTCATGGTATTTGCATGCTCGGATTCTCGAGTCTGCCCTTCCCACATATTGGAT TTCAAACCCGGAGAGGCTTTCGTGGTGAGGAACATTGCCAACATGGTCCCACCTTACGACCAGACGAAGTACTCCGGAGTGGGGGCAGCCGTTGAATATG CGGTGGTTCATTTGAAGGTGGAGAACATCGTAGTGATTGGACACAGTCGGTGCGGAGGGATTAAGGGGCTGATGAGTATCCCAGATGACGGCACCACAGC AAGGCAAGTCTTGTTTTATTTATTCCCAGCGAATGACTTCATTGAGCCATGGGTGAAAATCTGCTCAACTGCAAGCTCCAAGGTGAAGAATGACTGTAAA GACTTGAGCTTCGACGAGCAATGCTTCCTTTGCGAGAAGGCAAGTGGACGATTGTTCGAGGCTGTGAATGTGTCACTGGGAAATCTGTTGACGTATCCGT TCGTGAGAGATGCAGTCGTGAAGAAGACACTGGCCCTGAAAGGTGCCCATTACGATTTCGTCGATGGATGCTTCCAGCTATGGAACCTTGACTTCCAGAT TTCTCCCTCAGTCTCTGCTTGA
AA sequence Show only first row Show all	>Lus10030614 pacid=23140666 polypeptide=Lus10030614 locus=Lus10030614.g ID=Lus10030614.BGIv1.0 annot-version=v1.0 MAEQSYQEAIDGLTKLLSEKADLGSVAAAKIKQLTAELEGGVGGKDSDPVQRLKTGFHTFKTEKYEKNPDLYEPLKKGQWPKFMVFACSDSRVCPSHILD FKPGEAFVVRNIANMVPPYDQTKYSGVGAAVEYAVVHLKVENIVVIGHSRCGGIKGLMSIPDDGTTARQVLFYLFPANDFIEPWVKICSTASSKVKNDCK DLSFDEQCFLCEKASGRLFEAVNVSLGNLLTYPFVRDAVVKKTLALKGAHYDFVDGCFQLWNLDFQISPSVSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70410		ATBCA4	beta carbonic anhydrase 4 (.1....		Lus10030614 [exp]	0	1
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10003810 [exp]	5.7	0.9239
AT1G62422			unknown protein		Lus10031521 [exp]	8.3	0.9183
AT1G22540			Major facilitator superfamily ...		Lus10016932 [exp]	10.4	0.9025
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10039599 [exp]	11.2	0.9202
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Lus10038592 [exp]	12.0	0.8978
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Lus10005774 [exp]	16.6	0.8746
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10026908 [exp]	17.6	0.9167
AT5G65980			Auxin efflux carrier family pr...		Lus10012708 [exp]	18.0	0.9152
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10001885 [exp]	18.4	0.8897
AT4G12010			Disease resistance protein (TI...		Lus10008221 [exp]	25.0	0.9077

Compare expression of checked genes

Lus10030614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.