Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23740 483 / 2e-171 AOR alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT4G13010 106 / 6e-26 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT4G21580 89 / 1e-19 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) AT3G15090 82 / 6e-17 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G49670 79 / 1e-15 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT3G56460 66 / 1e-11 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT5G61510 65 / 3e-11 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT3G45770 58 / 5e-09 Polyketide synthase, enoylreductase family protein (.1.2) AT5G63620 54 / 1e-07 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030873 [exp] 672 / 0 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10003159 [exp] 121 / 2e-30 AT4G13010 449 / 4e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10025898 [exp] 119 / 3e-30 AT4G13010 446 / 1e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10038206 [exp] 118 / 7e-30 AT4G13010 451 / 3e-160 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10003158 [exp] 112 / 2e-27 AT4G13010 473 / 4e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10002347 [exp] 108 / 2e-26 AT4G13010 468 / 8e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10003495 [exp] 100 / 2e-23 AT3G15090 528 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10038205 [exp] 98 / 9e-23 AT4G13010 468 / 7e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10025899 [exp] 96 / 8e-22 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136100 [exp] 510 / 0 AT1G23740 504 / 9e-180 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.008G161600 [exp] 436 / 9e-154 AT1G23740 408 / 1e-142 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G391100 [exp] 122 / 1e-31 AT4G13010 469 / 8e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G342900 [exp] 118 / 4e-30 AT4G13010 484 / 2e-173 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G342800 [exp] 117 / 1e-29 AT4G13010 513 / 0.0 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G452600 [exp] 109 / 8e-27 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G343000 [exp] 92 / 3e-21 AT4G13010 369 / 2e-129 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.004G036100 [exp] 89 / 2e-19 AT4G21580 525 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Potri.009G103000 [exp] 85 / 1e-17 AT1G49670 943 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Potri.001G373200 [exp] 81 / 1e-16 AT3G15090 515 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10030615 pacid=23140695 polypeptide=Lus10030615 locus=Lus10030615.g ID=Lus10030615.BGIv1.0 annot-version=v1.0 ATGGAAGCCAATGCGATCACAGCCACAATAATCACATCTCCCAATCTCAGACGACCTTTCTCCACCACTTTCTCCCTCCGACTTCATCCTTCCTCCCTCG CCGGTGGAAGAAGCCGGAGCAAAAAACCCACTTCCCTAAACCACCACGCTTCTTCTTCCCGTCGACGTCACTCTCCTCATCTAGTCTCCGCAACAAGCTC CCCAGAGACCGCCACAGCACTCTCTTCCACTGTTCCTTCCGAAATGAAAGCTTGGATTTACGACGAGTACGGAACCGTCGATGTCCTGAAGTTCGACGAG AAGGTCTCCGTTCCCGAAATTAAAGACGACCAGGTTCTCGTCAAGGTCTTCGCCGCCGCTCTCAATCCCGTCGATTTCAAGAGACGACAGGGGAAGTTCA AGGCCACCGATTCCGTTCTTCCGACTGTTCCAGGGTACGATGTTGCGGGAGTGGTGGTAAAAGTAGGGAGTGAAGTGAAGGAGCTGAAGGAAGGAGACGA AGTGTACGGCGACATTCACGAGAAGGCATTGGATGGGCCTAAACAGTTCGGTTCTCTAGCAGAGTACACGGCCGTGGAAGAGAAACTGCTCGCAGTGAAA CCTAAGAATCTTGATTTCGCACAGGCTGCTGCGCTTCCTCTTGCGATCGAGACAGCTTATGAAGGTCTGGAGAAGACTGGGTTCTCTGCCGGCAAATCGA TTCTGGTCCTCAATGGCGCTGGTGGGGTTGGAAGCCTTGTGGTTCAGCTGGCGAAGCAAGTATTTGGAGCTTCAAGAGTTGCAGCCACTGCCAGCACTGG GAAGCTGGAGTTCCTGAAAAGCTTGGGAGTCGACTTGGTTATTGATTACACCAAGGAGAATTTCGAGGACTTGCCTGAAAAGTTCGATGTAGTCTACGAT GCCATTGGGCAATGTGACAGGGCTGTAAAGGCTATTAAAGAAGAGGGAAGTGTGGTGGCATTGACAGGAGCAGTGACACCACCAGGTTTCAGATTTGTGG TGACTTCCAATGGAGAGGTTCTGAAGAAGCTGAACCCTTATCTAGAGAGTGGGAAAGTGAAGGCCTTGCTTGATCCCAAAGGACCTTTCCCATTTTCTCA GGTTGCTGAGGCTTTCTCTTATCTCGAAACTGGCCACGCTACTGGGAAAGTAGTGGTTTCTCCAATTCCATGA
AA sequence Show only first row Show all	>Lus10030615 pacid=23140695 polypeptide=Lus10030615 locus=Lus10030615.g ID=Lus10030615.BGIv1.0 annot-version=v1.0 MEANAITATIITSPNLRRPFSTTFSLRLHPSSLAGGRSRSKKPTSLNHHASSSRRRHSPHLVSATSSPETATALSSTVPSEMKAWIYDEYGTVDVLKFDE KVSVPEIKDDQVLVKVFAAALNPVDFKRRQGKFKATDSVLPTVPGYDVAGVVVKVGSEVKELKEGDEVYGDIHEKALDGPKQFGSLAEYTAVEEKLLAVK PKNLDFAQAAALPLAIETAYEGLEKTGFSAGKSILVLNGAGGVGSLVVQLAKQVFGASRVAATASTGKLEFLKSLGVDLVIDYTKENFEDLPEKFDVVYD AIGQCDRAVKAIKEEGSVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKALLDPKGPFPFSQVAEAFSYLETGHATGKVVVSPIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030615 [exp]	0	1
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030873 [exp]	1.0	0.9706
AT5G51110			Transcriptional coactivator/pt...		Lus10022731 [exp]	2.8	0.9489
AT5G58330			lactate/malate dehydrogenase f...		Lus10037935 [exp]	4.2	0.9406
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10004576 [exp]	6.0	0.9342
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10014672 [exp]	6.7	0.9296
AT5G51110			Transcriptional coactivator/pt...		Lus10014182 [exp]	7.0	0.9233
AT3G26710		CCB1	cofactor assembly of complex C...		Lus10035119 [exp]	8.1	0.9240
AT3G19800			Protein of unknown function (D...		Lus10040969 [exp]	8.5	0.9227
AT2G45290			Transketolase (.1)		Lus10031128 [exp]	8.5	0.9188
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10041946 [exp]	9.2	0.9130

Compare expression of checked genes

Lus10030615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.