Plant FIBer expression Database

Lus10030616 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G10310 300 / 2e-95 ATHKT1, HKT1 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030872
[exp]
813 / 0 AT4G10310 390 / 2e-130 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Lus10040598
[exp]
379 / 1e-125 AT4G10310 374 / 3e-124 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Lus10026948
[exp]
296 / 1e-94 AT4G10310 306 / 5e-99 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G132200
[exp]
363 / 2e-119 AT4G10310 413 / 9e-140 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Potri.018G147501
[exp]
170 / 3e-50 AT4G10310 150 / 2e-43 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0030 Ion_channel PF02386 TrkH Cation transport protein
Representative CDS sequence
>Lus10030616 pacid=23140685 polypeptide=Lus10030616 locus=Lus10030616.g ID=Lus10030616.BGIv1.0 annot-version=v1.0
ATGAGAGTAATGAACTCCTTCCACCTTAGCCGCCGATCGACCTGCATCCACAGGTTCCTCGCAGTGCGAGTCAACTCGGTCTTCACTCAGCTCTGCTATT
TCCTCTCGATCTCCTTCGTGGGATACTCTGTCCTCAAGGCCATCGACACCCGTCCCGGCGCCGCCGTCCCCCGGAGCGTAGACTTCTTCTTCACCGCCGT
CTCTGCCGCCACCGTCTCCAGCATGTCCGTCGTCGAAATGGAGGTGTTCTCCGACGCCCAGCTCCTCTTCATGACCCTCCTCATGTTCGCTGGCGGTGAG
GTTTTCGTCTCCATGGTTGAACTTATGGTCAGAACTTACCGTATGAGGTCGGCGGCGGCGGCGGCGACTAATTCTGTGGAAATGATCGGTGGGGAAACTG
AAGTGGACCCCACCTTGACTCCACGTGGTCACGAGGTTGAATTAGTTGTGGTCCCACCACCACATGTTTCAACGGAGGAGGAATTAGAAAGAGGAATTGA
TCGTATTTGCTCGGTTCAACCCCTGAAGTGGAAATCAATTCGGTTTTTGAGCTGGGTGGTGATGGCCTTTCTCGTATTCGTTCACATCGCCGGTGTTTCT
TTGTTGTCGTTGTATCTTGCGCTCGTTTCGAGCGCGGGGAATATTCTGAGGGAGAAAGGATTGAAGAGCTTTACTTTTTCCCTCTTCACAATCGTATCAA
CGTTTTCGAGCTGTGGATTTGTCCCAACAAATGAAAACATGATCGTCTTCAGAAAGCAACCCATAATACTCCTTATTCTTATCCCTCAGGTCCTCCTCGG
TAACACTTTGTTTCCTCCCGGCCTCCGTTTTTGCGTCTGGCTCTTCGGCAAATTGTCTAAAAGATACCGCCATTATAGCACGTACCTACTCAGCAACACA
AAAGAAGTAGGATTCTACCACCTTTTACCGGGAAGGCAATCGTGGTACCTCACCACAACAGTAGTGGGGTTCGTGGCGATCAAACTTGTGATGTTCTGCG
CCCTTGATTGGCAGTCGGAGGGGCTAAGCGAGATGAACCCATTACAAAAAATTGTCGGAGGTCTGTTCGTGACGGTAAACGCACGACATTCTGGGGAGAC
CATCGTGGATTTGACCACCATCTCGACAGCCGTTCTACTGGTGTTGGTAGGGTTGATGTATCTTCCTCCTTACACGTCGTTCCTTCCTGCAAAGGCACGA
GACGAAAAAGAAGAAGAAGACGACGACAATTTTGCTGCAGGTGAAACAATTAGAAATAGACAAAGAAGAAGAGACAATAAGTCGAACACCAGCAACAACT
TGTTGGAGAATGTGATATTGTCGCAGCTCTCGTACTTGGCGGTGTTCGTCGTTATCATATGCATCACTGAGAGGAAAAACATGAAGGCCGATCCCCTTAA
CTTCAACGTCTTCAACGTTGTCCTCGAAGTCGTCAGTGCATATGGGAACGTGGGGTTTTCGATGGGGTACAGTTGTAAAAGACGGATAAACCCCGCCGGG
AGTTGCGAGGACAAGTGGTACGGTTTCGCCGGGAAATGGAGTGATGAGGGCAAAATTGTCTTGATTGTGGTAATGTTTTTTGGACGGCTCAAGAAGTTCA
ACTTGGACGGCGGGAAGTCTTGGAAGCTCCAGTGA
AA sequence
>Lus10030616 pacid=23140685 polypeptide=Lus10030616 locus=Lus10030616.g ID=Lus10030616.BGIv1.0 annot-version=v1.0
MRVMNSFHLSRRSTCIHRFLAVRVNSVFTQLCYFLSISFVGYSVLKAIDTRPGAAVPRSVDFFFTAVSAATVSSMSVVEMEVFSDAQLLFMTLLMFAGGE
VFVSMVELMVRTYRMRSAAAAATNSVEMIGGETEVDPTLTPRGHEVELVVVPPPHVSTEEELERGIDRICSVQPLKWKSIRFLSWVVMAFLVFVHIAGVS
LLSLYLALVSSAGNILREKGLKSFTFSLFTIVSTFSSCGFVPTNENMIVFRKQPIILLILIPQVLLGNTLFPPGLRFCVWLFGKLSKRYRHYSTYLLSNT
KEVGFYHLLPGRQSWYLTTTVVGFVAIKLVMFCALDWQSEGLSEMNPLQKIVGGLFVTVNARHSGETIVDLTTISTAVLLVLVGLMYLPPYTSFLPAKAR
DEKEEEDDDNFAAGETIRNRQRRRDNKSNTSNNLLENVILSQLSYLAVFVVIICITERKNMKADPLNFNVFNVVLEVVSAYGNVGFSMGYSCKRRINPAG
SCEDKWYGFAGKWSDEGKIVLIVVMFFGRLKKFNLDGGKSWKLQ

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G10310 ATHKT1, HKT1 high-affinity K+ transporter 1... Lus10030616
[exp]
0 1
AT5G19530 ACL5 ACAULIS 5, S-adenosyl-L-methio... Lus10000469
[exp]
1.0 0.9447
AT4G10310 ATHKT1, HKT1 high-affinity K+ transporter 1... Lus10030872
[exp]
1.7 0.9304
AT5G23750 Remorin family protein (.1.2) Lus10008477
[exp]
2.2 0.9164
AT4G31500 SUR2, RNT1, RED... SUPERROOT 2, RUNT 1, RED ELONG... Lus10033172
[exp]
4.7 0.8837
AT4G21340 bHLH bHLH103, B70 basic helix-loop-helix (bHLH) ... Lus10005959
[exp]
5.1 0.9001
AT4G37980 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE... Lus10023268
[exp]
8.1 0.9336
AT2G36780 UDP-Glycosyltransferase superf... Lus10012011
[exp]
11.3 0.9205
AT1G14190 Glucose-methanol-choline (GMC)... Lus10032346
[exp]
12.3 0.9057
AT5G59310 LTP4 lipid transfer protein 4 (.1) Lus10029226
[exp]
15.0 0.8996
AT2G38170 RCI4, ATCAX1, C... RARE COLD INDUCIBLE 4, cation ... Lus10040674
[exp]
18.8 0.9030

Lus10030616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.