Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23750 229 / 6e-79 Nucleic acid-binding, OB-fold-like protein (.1) AT1G10590 214 / 4e-73 Nucleic acid-binding, OB-fold-like protein (.1.2.3) AT2G33845 189 / 1e-62 Nucleic acid-binding, OB-fold-like protein (.1) AT4G28440 168 / 1e-54 Nucleic acid-binding, OB-fold-like protein (.1) AT1G03810 161 / 7e-52 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030871 [exp] 280 / 4e-99 AT1G23750 226 / 2e-77 Nucleic acid-binding, OB-fold-like protein (.1) Lus10013010 [exp] 210 / 3e-71 AT1G23750 206 / 1e-69 Nucleic acid-binding, OB-fold-like protein (.1) Lus10029155 [exp] 209 / 6e-71 AT1G23750 206 / 1e-69 Nucleic acid-binding, OB-fold-like protein (.1) Lus10015411 [exp] 172 / 7e-56 AT2G33845 186 / 4e-61 Nucleic acid-binding, OB-fold-like protein (.1) Lus10002172 [exp] 171 / 1e-55 AT2G33845 189 / 1e-62 Nucleic acid-binding, OB-fold-like protein (.1) Lus10013989 [exp] 169 / 7e-55 AT4G28440 186 / 3e-61 Nucleic acid-binding, OB-fold-like protein (.1) Lus10039889 [exp] 165 / 2e-53 AT2G33845 185 / 1e-60 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G041000 [exp] 245 / 4e-85 AT1G23750 234 / 1e-80 Nucleic acid-binding, OB-fold-like protein (.1) Potri.008G189900 [exp] 242 / 5e-84 AT1G23750 239 / 9e-83 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G396100 [exp] 205 / 5e-69 AT1G23750 194 / 5e-65 Nucleic acid-binding, OB-fold-like protein (.1) Potri.011G114800 [exp] 204 / 1e-68 AT2G33845 214 / 3e-72 Nucleic acid-binding, OB-fold-like protein (.1) Potri.007G137600 [exp] 173 / 2e-56 AT4G28440 193 / 2e-64 Nucleic acid-binding, OB-fold-like protein (.1) Potri.017G014400 [exp] 167 / 2e-54 AT4G28440 194 / 9e-65 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030617 pacid=23140704 polypeptide=Lus10030617 locus=Lus10030617.g ID=Lus10030617.BGIv1.0 annot-version=v1.0 ATGGCAGATGCAAAACCAGGATTGAGGAAGCCCGTTTTCACCAAGGTTGAGCAGCTTCGCCCAGGGACCAGCGGTCATACCCTAACCGTAAAGGTTGTCA ACACGAAAATGGTGTTGCAGAAGGGTCGCGTCGATGGTCCTCAAGTGCGCCAAATGCGAATTGCTGAATGTATGGTGGGAGACGACACCGGGATTATTAT TTTCACTGCAAGGAATGATCAAGTGGACCTGATGAAAGAAGGCAGCACAGTGACCCTCCGCAATGCGAAGATCGACATGTTCAAAGGATCAATGAGGCTT GCAGTGGACAAGTGGGGACGCGTCGAAGTCGAAGAGAAAGATCCAGCAACTTTCACAGTCAAGGTAGAGAACAACCTCTCGCTAATCGAGTATGAGCTTG TCAACGTTGTGGAAGAGTGA
AA sequence Show only first row Show all	>Lus10030617 pacid=23140704 polypeptide=Lus10030617 locus=Lus10030617.g ID=Lus10030617.BGIv1.0 annot-version=v1.0 MADAKPGLRKPVFTKVEQLRPGTSGHTLTVKVVNTKMVLQKGRVDGPQVRQMRIAECMVGDDTGIIIFTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRL AVDKWGRVEVEEKDPATFTVKVENNLSLIEYELVNVVEE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030617 [exp]	0	1
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10004254 [exp]	1.7	0.8949
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Lus10026575 [exp]	2.8	0.8689
AT5G66410		PLP3B	phosducin-like protein 3 homol...		Lus10016055 [exp]	3.9	0.8683
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10042318 [exp]	3.9	0.9028
AT2G34560			P-loop containing nucleoside t...		Lus10023310 [exp]	6.2	0.9005
AT1G15020		QSO2, ATQSOX1	quiescin-sulfhydryl oxidase 1 ...		Lus10035270 [exp]	9.1	0.8332
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10042162 [exp]	13.5	0.8652
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10016486 [exp]	15.5	0.8209
AT2G47760		AtALG3, ALG3	Arabidopsis thaliana asparagin...		Lus10031921 [exp]	17.3	0.8378
AT5G51520			Plant invertase/pectin methyle...		Lus10031712 [exp]	20.5	0.8669

Compare expression of checked genes

Lus10030617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.