Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23790 211 / 6e-62 Plant protein of unknown function (DUF936) (.1) AT1G70340 199 / 2e-57 Plant protein of unknown function (DUF936) (.1) AT1G08760 142 / 7e-36 Plant protein of unknown function (DUF936) (.1) AT3G14170 135 / 3e-34 Plant protein of unknown function (DUF936) (.1) AT4G13370 134 / 4e-33 Plant protein of unknown function (DUF936) (.1) AT3G19610 119 / 2e-28 Plant protein of unknown function (DUF936) (.1) AT2G31920 91 / 3e-19 Plant protein of unknown function (DUF936) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030870 [exp] 796 / 0 AT1G23790 391 / 6e-131 Plant protein of unknown function (DUF936) (.1) Lus10029158 [exp] 471 / 1e-161 AT1G70340 477 / 2e-164 Plant protein of unknown function (DUF936) (.1) Lus10041407 [exp] 321 / 1e-107 AT1G23790 135 / 7e-37 Plant protein of unknown function (DUF936) (.1) Lus10013006 [exp] 275 / 3e-87 AT1G23790 300 / 6e-97 Plant protein of unknown function (DUF936) (.1) Lus10013007 [exp] 241 / 9e-77 AT1G23790 253 / 6e-82 Plant protein of unknown function (DUF936) (.1) Lus10026806 [exp] 147 / 1e-37 AT1G08760 732 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10036076 [exp] 146 / 5e-37 AT1G08760 731 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10008138 [exp] 136 / 6e-35 AT3G14170 350 / 8e-117 Plant protein of unknown function (DUF936) (.1) Lus10019398 [exp] 136 / 7e-34 AT4G13370 646 / 0.0 Plant protein of unknown function (DUF936) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192300 [exp] 396 / 5e-132 AT1G23790 572 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.010G038600 [exp] 213 / 8e-64 AT1G23790 285 / 1e-91 Plant protein of unknown function (DUF936) (.1) Potri.007G131600 [exp] 145 / 4e-37 AT1G08760 674 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.017G026200 [exp] 144 / 2e-36 AT1G08760 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.003G070200 [exp] 135 / 4e-34 AT3G14170 458 / 2e-157 Plant protein of unknown function (DUF936) (.1) Potri.018G072500 [exp] 130 / 5e-32 AT4G13370 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.001G294600 [exp] 121 / 6e-29 AT3G19610 177 / 2e-47 Plant protein of unknown function (DUF936) (.1) Potri.009G024800 [exp] 106 / 3e-24 AT2G31920 293 / 1e-91 Plant protein of unknown function (DUF936) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06075 [flax] [poplar] DUF936 Plant protein of unknown function (DUF936)
Representative CDS sequence Show only first row Show all	>Lus10030619 pacid=23140745 polypeptide=Lus10030619 locus=Lus10030619.g ID=Lus10030619.BGIv1.0 annot-version=v1.0 ATGGCGGCTCTGACCCCGGGAGTACTGTTGAAGCTACTGGAAGCAATGGACAGAGGGAAGAAGCTGACGAGGGAGCACCGGAGCACGCTCCTCCAGGTAA CCGATATCGTACCTGTCGATCTCGACGAGAAGTCTCTGTTTCCGAAACAGGGATTCTACATCAAGGTCTCGGACTCTTCGCATTCGATCTACGTCTCGTT ACCTCCTGGGCAGGACGATTTGGTTCTGAGCAACAAGATGCAGCTCGGTCAGTTCGTTTATGTGGACAGGTTGGAGCCTGGAACGCCGGTTCCGGTTGTG ATAGGAGCGAAGCTGATTCCTGGGAGACGACCGTTGACCCCGGAGCCTTTGATGGCGGGGTTGAGAAAAGAAACAGGGGAGAAGAAGGAAATTGCTCGAA TTAGTAATCGGAGAAGTTCTTGGGGGAAAATCGGAGGAGATAAGAATCAGATTTGTTCTTCTTCTCCAACGGAGTTAAAGAAGATAGTTCCGTTGGATTC CGATCAGTGTTCTACTCCGGCGAAACAGAGCTCGATGATAAGTGGGAGATCGATTTACAACAGGGACCGAAACGAGCTGCGGTCGAAAATGGCGAATCGT TTGAAGGTCGGACAAAGCCCTTCTTCTTTACCGTTGAAATCTCCGAGGAGTCGAAGCGATCTCGGAGATGGAGACCGGCGTAGGATCCCAATTAGCCCCT GCATCTCCTCTGTAGGCGAAGAAAACCTGAGTTTGATGAACACGAAACTCGCTGCTTCAACGAAATCGGGCAGTGGAGAAGTAGTACATGACTCGTTCAA TCAGTCTAGTGATCCGGTCTCTACTGGATCTGAAACCAGTCTGCCTCTGGATTTACCTGGAAAGCTAAGCAAGCTCGGAAAGGAAGCTTTGCAGCAGAGG GAAACTGCACAGAAGCTTGCTAAACAGGCCTTGAGAGAAGCTTCTGCTACCGAAACATTAATCCAATCTTTGAAGATGTTCTCAGAAGTGACCAAATCAG CTAGCCCCGAATCTCCAGCCGGTTGCTTCGACAAGTTCCTCGAATTCCACGCCCGAATTTCCCAGTCCATCGACGAAATGAACTCCATCCAATCTGCTGC CACTAGTGTTCCTGCAACTCCGAAATCGAAACCTGGCGAAAAGGTTAAACATATGAATCCAGAAGAAACCTTCCCAGCTTTGAACGAGCTCATTCGCAAC TCAAAAAGGCGAACATCCATCTACAATCCCCCCACAGTCCAATGTAGCAATTCAAGGCTGTCGAGATCGTCGAATGATGAGAACAAGAGACCAGCAATTA CAACTGCTGCTACTCCATCAGTTTCTGGCAGCTTGAGCAGGATGATTAAGCTGGGGAAGGAGATTGAGATCGAAGCGGGGATCTGGTTCCTGGAATTCGT AGAAAAAGCACTGGAAAGTGGGATGAAGAAATGTAGTAGGAAGGAAGTGTCGCAGTTGGTTATGATGAAGTTGATCAACTGGGTAGAGAATGAACAATGC AGAAGCAAAGTTCATCATCCCAAAACTGCTCAGATTGCTAGAAGGTTAAGGATCAAGATGAAGAATCCTTGA
AA sequence Show only first row Show all	>Lus10030619 pacid=23140745 polypeptide=Lus10030619 locus=Lus10030619.g ID=Lus10030619.BGIv1.0 annot-version=v1.0 MAALTPGVLLKLLEAMDRGKKLTREHRSTLLQVTDIVPVDLDEKSLFPKQGFYIKVSDSSHSIYVSLPPGQDDLVLSNKMQLGQFVYVDRLEPGTPVPVV IGAKLIPGRRPLTPEPLMAGLRKETGEKKEIARISNRRSSWGKIGGDKNQICSSSPTELKKIVPLDSDQCSTPAKQSSMISGRSIYNRDRNELRSKMANR LKVGQSPSSLPLKSPRSRSDLGDGDRRRIPISPCISSVGEENLSLMNTKLAASTKSGSGEVVHDSFNQSSDPVSTGSETSLPLDLPGKLSKLGKEALQQR ETAQKLAKQALREASATETLIQSLKMFSEVTKSASPESPAGCFDKFLEFHARISQSIDEMNSIQSAATSVPATPKSKPGEKVKHMNPEETFPALNELIRN SKRRTSIYNPPTVQCSNSRLSRSSNDENKRPAITTAATPSVSGSLSRMIKLGKEIEIEAGIWFLEFVEKALESGMKKCSRKEVSQLVMMKLINWVENEQC RSKVHHPKTAQIARRLRIKMKNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23790			Plant protein of unknown funct...		Lus10030619 [exp]	0	1
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10001817 [exp]	2.0	0.8899
AT5G62550			unknown protein		Lus10024245 [exp]	3.9	0.8652
AT3G58640			Mitogen activated protein kina...		Lus10020708 [exp]	5.8	0.8670
AT5G62550			unknown protein		Lus10023614 [exp]	6.0	0.8500
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10016978 [exp]	9.8	0.8341
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Lus10032316 [exp]	11.2	0.8397
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10023586 [exp]	13.4	0.7931
AT3G58640			Mitogen activated protein kina...		Lus10029833 [exp]	18.2	0.8022
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10039580 [exp]	18.8	0.7824
AT5G02440			unknown protein		Lus10025345 [exp]	25.8	0.7877

Compare expression of checked genes

Lus10030619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.