Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10580 858 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54520 182 / 4e-51 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 118 / 3e-29 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 111 / 6e-27 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 102 / 2e-23 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 100 / 4e-23 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 99 / 6e-22 PRL1 pleiotropic regulatory locus 1 (.1) AT3G16650 94 / 3e-20 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 89 / 5e-18 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G15440 84 / 2e-16 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030869 [exp] 1041 / 0 AT1G10580 939 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014805 [exp] 160 / 9e-45 AT5G54520 403 / 2e-140 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 110 / 3e-26 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 108 / 7e-26 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 108 / 9e-26 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 105 / 8e-25 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 97 / 1e-21 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 97 / 1e-21 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006511 [exp] 98 / 2e-21 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G064600 [exp] 884 / 0 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G172800 [exp] 876 / 0 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G410500 [exp] 177 / 3e-49 AT5G54520 510 / 5e-180 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 114 / 7e-28 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 111 / 6e-27 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 107 / 9e-26 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 102 / 2e-23 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 100 / 5e-23 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G012800 [exp] 99 / 9e-22 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.003G060500 [exp] 99 / 2e-21 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10030620 pacid=23140540 polypeptide=Lus10030620 locus=Lus10030620.g ID=Lus10030620.BGIv1.0 annot-version=v1.0 ATGGATCTTCTCCAATCCACCTACAACGACGGCGAAGAAGTGGAAAACCCCACCTCATCTCCCGACGCCTCGCCGCCGCGTCTCCTCAAGGGAAGATCCG CCGCCCCGGCAGTTGACGACACCATGCTCGCCCTAACCGTAGCTCAGAAGAATCTATCCTCTTCAAGGCCAATCGATCCGACTCAGCACATTGTCTCCTT CAATCCAACCTACGACCAGCTCTGGACTCCGATCGTGGGCCCCTCGCACCCGTTCGCCAAGGACGGGATCGCTCAGGGGATGCGGAACCACAAGCTAGGG TTCGTTGAGGACGCCGCGATCGATGCATTCACCTTCGACGAGCAGCACAACACGTTCCAGAAGTACGGATTCGCCGCAGATCCATCGGGGACTGAGTACG TCGGCGATTTGAAGGCGCTGTCGAAGAACCGTGGGAATACGGTGTATAGCATTCCGCAGCAGGAGCAGAAGAGGCGGCGGATCGAGAAGAAGAAACAGGA AAGGGAAGATGATGATGGAGAAGAAGAGAATGTCGATAGGGAGGAAGTTGAGAATCCGGCTACTGATACGTGGCTGCTGAAGAACAAGAAGAGTCCATGG GCAGGGAAGAAGGAAGGATTGCAAGGGGAATTGACTGAGGAGCAGAAGAAGTACGCTGAAGAACACGCTAAGAAGAAGGAAGAGAAGGGAGCTAGCAGTG AAAAGGGAGAGGCTGTCGTTGAGAAAACTACTTTCCATGGGGACGAAGCGAAGGATTATCAAGGGAGGTCATGGATTGCTCCTCCTAAAGATGCGAAAGC TACGAATGACCATTGCTACATACCGAAGAAGTGGGTGCGAACATGGAGTGGGCATACCATGGGAGTTTCCGCGATCAGATTCTTCCCCAAGTATGGCCAT TTGATCCTCTCAGCTGGGATGGACACCAAGGTAAAGATATGGGACGTTGAGAACTCAGGTAAGTGTATGAGAACTTACATGGGTCATTCTAAAGCTGTTA GGGATATCTGTTTCACCAATGATGGCACTAAGTTTCTGTCTGCTGGGTATGATAAGAACATTAAGTATTGGGATACTGAGACCGGTCAGGTTATCTCGAC TTTCTCGACTGGAAAGCTTCCTTATGTAGTTAAGTTGAATCCCGACGAGGATAAACAGAACATACTTTTGGCTGGAATGAGTGATAAGAAGATTGTGCAG TGGGATATGAACTCTGGTCAGATTACTCAGGAGTATGATCAGCATTTAGGGGCTGTGAATACCATCACCTTCGTGGATAACAACAGGAGGTTCGTCACAT CCAGCGACGATAAATCCCTTCGGGTTTGGGAATTCGGGATACCCGTTGTGATTAAGTACATCAGCGAGCCTCATATGCATTCGATGCCGTCGATAGCGGT TCATCCAAACTCGAACTGGGTGGCGGCGCAGAGTCTGGATAACCAGATCCTTCTTTACAGCATTCGGGAGTGGGTCCAGTTGCACAAGAAGAAGAGGTTT GCTGGACACATTGTGTCTGGATATGCGTGCCAGGTCAATTTCTCCCCCGATGGGCGGTTTGTGATGTCGGGGGACGGTGAAGGGAGGTGTTGGTTCTGGG ACTGGAAGAGCTGCAAAGTGTTCAGGACGTTGAAGTGCCATGACAAAGTCTGCATTGGTGCTGAGTGGCATCCGCTTGAGACGAGTAAAGTTGCTACCTG CGGTTGGGATGGCAAGATTCACTACTGGTAA
AA sequence Show only first row Show all	>Lus10030620 pacid=23140540 polypeptide=Lus10030620 locus=Lus10030620.g ID=Lus10030620.BGIv1.0 annot-version=v1.0 MDLLQSTYNDGEEVENPTSSPDASPPRLLKGRSAAPAVDDTMLALTVAQKNLSSSRPIDPTQHIVSFNPTYDQLWTPIVGPSHPFAKDGIAQGMRNHKLG FVEDAAIDAFTFDEQHNTFQKYGFAADPSGTEYVGDLKALSKNRGNTVYSIPQQEQKRRRIEKKKQEREDDDGEEENVDREEVENPATDTWLLKNKKSPW AGKKEGLQGELTEEQKKYAEEHAKKKEEKGASSEKGEAVVEKTTFHGDEAKDYQGRSWIAPPKDAKATNDHCYIPKKWVRTWSGHTMGVSAIRFFPKYGH LILSAGMDTKVKIWDVENSGKCMRTYMGHSKAVRDICFTNDGTKFLSAGYDKNIKYWDTETGQVISTFSTGKLPYVVKLNPDEDKQNILLAGMSDKKIVQ WDMNSGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIAVHPNSNWVAAQSLDNQILLYSIREWVQLHKKKRF AGHIVSGYACQVNFSPDGRFVMSGDGEGRCWFWDWKSCKVFRTLKCHDKVCIGAEWHPLETSKVATCGWDGKIHYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030620 [exp]	0	1
AT5G20600			unknown protein		Lus10027609 [exp]	1.0	0.9671
AT4G31200			SWAP (Suppressor-of-White-APri...		Lus10016927 [exp]	2.0	0.9570
AT1G53850		PAE1, ATPAE1	ARABIDOPSIS 20S PROTEASOME ALP...		Lus10037454 [exp]	3.5	0.9539
AT1G27090			glycine-rich protein (.1)		Lus10037224 [exp]	3.7	0.9598
AT1G76820			eukaryotic translation initiat...		Lus10012856 [exp]	5.3	0.9512
AT4G39880			Ribosomal protein L23/L15e fam...		Lus10041700 [exp]	5.7	0.9585
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021051 [exp]	7.1	0.9557
AT5G13780			Acyl-CoA N-acyltransferases (N...		Lus10016378 [exp]	7.9	0.9502
AT1G76810			eukaryotic translation initiat...		Lus10030500 [exp]	8.8	0.9459
AT2G44065			Ribosomal protein L2 family (....		Lus10001572 [exp]	9.4	0.9376

Compare expression of checked genes

Lus10030620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.