Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01490 281 / 1e-91 Protein kinase superfamily protein (.1) AT4G14780 271 / 4e-88 Protein kinase superfamily protein (.1) AT5G50000 269 / 4e-87 Protein kinase superfamily protein (.1) AT3G22750 265 / 1e-85 Protein kinase superfamily protein (.1) AT3G63260 264 / 5e-85 ATMRK1 Protein kinase superfamily protein (.1.2) AT3G46930 183 / 4e-53 Protein kinase superfamily protein (.1) AT4G31170 182 / 4e-53 Protein kinase superfamily protein (.1.2.3.4) AT5G58950 178 / 9e-51 Protein kinase superfamily protein (.1) AT2G24360 174 / 4e-50 Protein kinase superfamily protein (.1) AT1G62400 165 / 2e-47 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030868 [exp] 546 / 0 AT3G01490 253 / 3e-81 Protein kinase superfamily protein (.1) Lus10022227 [exp] 281 / 5e-91 AT3G01490 665 / 0.0 Protein kinase superfamily protein (.1) Lus10039357 [exp] 277 / 6e-90 AT3G22750 611 / 0.0 Protein kinase superfamily protein (.1) Lus10042622 [exp] 275 / 2e-89 AT3G22750 605 / 0.0 Protein kinase superfamily protein (.1) Lus10002368 [exp] 273 / 1e-88 AT5G50000 659 / 0.0 Protein kinase superfamily protein (.1) Lus10042129 [exp] 273 / 2e-88 AT5G50000 657 / 0.0 Protein kinase superfamily protein (.1) Lus10006603 [exp] 265 / 3e-85 AT3G22750 607 / 0.0 Protein kinase superfamily protein (.1) Lus10022076 [exp] 227 / 4e-71 AT3G22750 545 / 0.0 Protein kinase superfamily protein (.1) Lus10020374 [exp] 175 / 2e-50 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G079000 [exp] 276 / 4e-90 AT5G50000 661 / 0.0 Protein kinase superfamily protein (.1) Potri.017G072900 [exp] 276 / 1e-89 AT3G01490 667 / 0.0 Protein kinase superfamily protein (.1) Potri.015G074400 [exp] 275 / 1e-89 AT5G50000 654 / 0.0 Protein kinase superfamily protein (.1) Potri.001G351300 [exp] 274 / 5e-89 AT3G01490 664 / 0.0 Protein kinase superfamily protein (.1) Potri.002G049700 [exp] 266 / 5e-86 AT3G22750 600 / 0.0 Protein kinase superfamily protein (.1) Potri.008G156000 [exp] 265 / 2e-85 AT3G22750 608 / 0.0 Protein kinase superfamily protein (.1) Potri.005G213200 [exp] 262 / 3e-84 AT3G22750 575 / 0.0 Protein kinase superfamily protein (.1) Potri.010G083500 [exp] 259 / 5e-83 AT3G22750 601 / 0.0 Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 185 / 3e-54 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.018G001800 [exp] 184 / 4e-54 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10030621 pacid=23140741 polypeptide=Lus10030621 locus=Lus10030621.g ID=Lus10030621.BGIv1.0 annot-version=v1.0 ATGGAAGCGGAGATTATTAACCACGAAGATAATGATGAATATGATGAAGAAAAAATCAGTAGCAGCTCCAACAACACTGGCACCACTGATCTCGCTACAA ACAACGAGACGATGATGATCAGCTCCACGTCCAAGCGGAAGGTCACGGCGATGGTCGATCTCAAGAAGAACTTGGATCGACTCGATCGCCATCTCGACCG AGTCGGCCTCCTCTTGTCGAATAAGAATCTCGGCGGAGGAGGGACCGCGGACACGACGATGACGACGACTGAGGCTGCGGTCGCAGAATGGGAGGTTGAT TCCGGGAAACTTGTGCTCGGGAAGCTCATCGGCCGGGGAACCTACGCCGCTGTTTATCGCGGGACTTACGACGGCAAAGAAGTCGCAGTGAAAAAACTGG AATATTGGAAAGAAAAAGGAGAAGATGAAGATGGTAGCAGCAGAATTGAGGGTAGAAGGAAAGCTCAATTAACAAGTCGGTTGAGACATGAGGCTACCCT TTGGCATAAACTCTGCCATCCTAATGTTTGTGAGAATGATAAAAATTTATTTACAAACTGGTCACTCGGCGGAACCTTGAAATCGTACCTGGAGAAGTAC AAGCGAGTGAGAAAGAAGCTTCCGCTCGACAAAGTCCTGAATCTCGCCGTACAGCTCGCCAAGGGAATCGATTACCTCCATTCCCGGAAGGTGATCCACC GTGACGTCAAGCCAGACAACGTCGTCCTCGAAGCTAATAGCAAGGCGCTGAAGATAATCGACTTCGGTGTTGCCCGAATGGAGCCGGCGAATCCAGGGGA GATGGCTGGCCAGATTGGGACCATCGGATACATGGCGCCAGAGGTCTTCGAGTCCCTGCCATACGATCGGAAGTGCGACATTTACAGCTTCGGGATCTCG CTCTGGGAGATCTACTGCTGTGATGCTTCGTTCGCCAATTACGGCTTCACCGAGCACACCTCTCCTTCTGTTTACAAGAACGTCCGGCCGGAGATACCCC GAAACTGCCCGGAGAAGCTAGCGGATATAATGAAGCAATGCTGGGAGATAGAGCCGAGGAGGAGACCGGCCATGAGCGAAGTGGTATCAATGTTAGAGGA GATCAGTCCATGCAAGGTTCCGAGAAAGACAACACTCCTCTTGTCACAATGCTTCTGTATAAGGTCCCAACCTTGCTCCAACATCTAA
AA sequence Show only first row Show all	>Lus10030621 pacid=23140741 polypeptide=Lus10030621 locus=Lus10030621.g ID=Lus10030621.BGIv1.0 annot-version=v1.0 MEAEIINHEDNDEYDEEKISSSSNNTGTTDLATNNETMMISSTSKRKVTAMVDLKKNLDRLDRHLDRVGLLLSNKNLGGGGTADTTMTTTEAAVAEWEVD SGKLVLGKLIGRGTYAAVYRGTYDGKEVAVKKLEYWKEKGEDEDGSSRIEGRRKAQLTSRLRHEATLWHKLCHPNVCENDKNLFTNWSLGGTLKSYLEKY KRVRKKLPLDKVLNLAVQLAKGIDYLHSRKVIHRDVKPDNVVLEANSKALKIIDFGVARMEPANPGEMAGQIGTIGYMAPEVFESLPYDRKCDIYSFGIS LWEIYCCDASFANYGFTEHTSPSVYKNVRPEIPRNCPEKLADIMKQCWEIEPRRRPAMSEVVSMLEEISPCKVPRKTTLLLSQCFCIRSQPCSNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01490			Protein kinase superfamily pro...		Lus10030621 [exp]	0	1
AT5G14345		AtENODL21	early nodulin-like protein 21 ...		Lus10032111 [exp]	11.0	0.7309
AT3G19090			RNA-binding protein (.1)		Lus10012058 [exp]	15.1	0.6014
AT5G49690			UDP-Glycosyltransferase superf...		Lus10002351 [exp]	23.4	0.6686
AT2G32360			Ubiquitin-like superfamily pro...		Lus10015125 [exp]	27.5	0.6665
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026138 [exp]	30.0	0.6627
AT3G58310			Domain of unknown function (DU...		Lus10042124 [exp]	33.7	0.5930
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10039946 [exp]	37.8	0.5964
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016175 [exp]	38.1	0.6528
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10036120 [exp]	41.0	0.6334
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10012516 [exp]	44.0	0.6256

Compare expression of checked genes

Lus10030621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.