Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10570 221 / 6e-65 ULP1C, OTS2 UB-LIKE PROTEASE 1C, OVERLY TOLERANT TO SALT 2, Cysteine proteinases superfamily protein (.1.2) AT1G60220 220 / 2e-64 ULP1D, OTS1 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) AT4G33620 120 / 2e-28 Cysteine proteinases superfamily protein (.1) AT1G09730 105 / 2e-23 Cysteine proteinases superfamily protein (.1.2) AT3G48480 61 / 5e-10 Cysteine proteinases superfamily protein (.1) AT4G15880 62 / 6e-10 ATESD4, ESD4 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) AT4G00690 56 / 2e-08 ULP1B UB-like protease 1B (.1) AT3G06910 50 / 2e-06 ULP1A, ELS1, AtULP1a ESD4-LIKE SUMO PROTEASE 1, UB-like protease 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030867 [exp] 682 / 0 AT1G60220 250 / 2e-76 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Lus10000917 [exp] 122 / 6e-29 AT1G09730 514 / 1e-169 Cysteine proteinases superfamily protein (.1.2) Lus10020445 [exp] 108 / 1e-24 AT4G33620 404 / 6e-129 Cysteine proteinases superfamily protein (.1) Lus10023104 [exp] 57 / 2e-08 AT4G15880 407 / 5e-138 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Lus10002875 [exp] 52 / 8e-07 AT4G15880 404 / 2e-136 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Lus10035097 [exp] 48 / 6e-06 AT3G48480 146 / 4e-43 Cysteine proteinases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G040600 [exp] 310 / 8e-99 AT1G60220 410 / 3e-137 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Potri.002G105700 [exp] 121 / 9e-29 AT1G09730 580 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.005G155600 [exp] 118 / 1e-27 AT1G09730 551 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.017G044000 [exp] 111 / 2e-25 AT1G09730 452 / 4e-143 Cysteine proteinases superfamily protein (.1.2) Potri.007G115400 [exp] 110 / 4e-25 AT1G09730 427 / 3e-135 Cysteine proteinases superfamily protein (.1.2) Potri.015G090800 [exp] 59 / 3e-09 AT3G48480 228 / 8e-74 Cysteine proteinases superfamily protein (.1) Potri.010G180300 [exp] 56 / 2e-08 AT3G48480 278 / 3e-93 Cysteine proteinases superfamily protein (.1) Potri.008G221500 [exp] 52 / 6e-07 AT4G15880 436 / 3e-149 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Potri.010G013700 [exp] 52 / 9e-07 AT4G15880 322 / 8e-104 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02902 [flax] [poplar] Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10030622 pacid=23140555 polypeptide=Lus10030622 locus=Lus10030622.g ID=Lus10030622.BGIv1.0 annot-version=v1.0 ATGGCGGAAGACAGTTCGAAGAAGCGGAAGCTGATACTCGATTTGGACGAGGTTGTCCGCCATACTGACGACAATAGTTCTATTATTGAAGTTGAGAGGG ACAATCGTTCCAGTGATGATCGGAGCCAGCGCCGACCAACGGCGATGGAGTCGGAGTACCCGGAGCACTATTCCTTGAAGGAGGAGTGCAGCCGTATGGG TGATTGGAAACTGGAAGAGACCATTCAGAGACAGAAAAAGCTTCATGCGAATGTTGGCAAGAATTTGCCCGACGGAGGGAGGAAAATCGAGGCTGCCATC AAAATCATGGAAAACGAGCGAGAGAAGAGGAAAACGCAAAGGCCCAGAATGGATGCTGATAAAGCAAAGCAACCCGCACAGCTAGCAAATCCAGGGTTGA ATGGTACTCCAGTTGGTTTGTCAAAGTTTGCCTCGTCATTTCGGAAGAAGATGGAAGATGATGATGAACGCTCAGATCGAAAGCCTTTTGATAAAGATTT GTCTGCTATGGGAAGAGGTCTGAAAGTGAAATCTTCTGATGATCCTTCCCACAAAGCAAGACAGAGAAATGGGCCTTCGACACAACCGACTTTTCAATCT TCAGAAAAGTCTTCTTTCAGGTCGTCTGTTGATAATCGGGGTAGCAAGAATATGGACATAACTCCTGGTAACTTTTACTCCAGAGGGGAAAGGATAGCCA AGAAAAATTCGAATGGGATACAGAACATTGAAGTTCCTTCTTCACATAGTTTGAGACCTAGAAAGGCAAGTATGAAAAACGACATGATTCTTTTAACACT CTCATTGAACTGTTTGGAAGAGCGAGTTTATCTTTCGGATGATGATGATGAAGTTATGGAGACAGTCTCAGATGGGAAATTTGATGAATGGGGTGATCAA GACTCTGTTCAAGTTCAGTACACGGATATGAAATGTCTGGCCCCTAAAAGTATGGTGACCTCAAAAGTTATGAACTTTTACATTCGGTACCTAGAGCTAC AAGTGATGCCGACAAAGAAGGCTAATTCCCACATATTCTCTACGTTCTTCTACAGTAAGCTGAAACGAGAACTATCAGACAAGGGAAGTGAAAAAGAGTC CGTTTTTGTCAAGTGCAGAAAATGGTGGAAGGGCATTAATCTGTTTGAAAAGGCTTATGTACTGATTCCCATCCATGAAGAGAGTCACTGGAGCTTGGCG ATAATCTGTTTCCCAGAAAAGGATGACAAATCAGATCTGATCCTTCTTCATCTGGACTCATTGGAACTTCACTCTAGCAGAGACATTTTCGACGTTATCA AAAGCTGCTTGAGAGAAGAATGGAAGTGTTTGCATAAAGACATTGCTCCTTCCAATCTTCAGATGTCCGAAAATAGAATACTGACGCGTCTTCCTGATAT CTATTCGAAAAGCGTAAAGGTTCCCCAACAGGGAAATGACTACGATTGTGGCATCTTTGTACTCTACTTCATGCAGCGATTCATCGAAGATGCCCCGGAG AGGCTGAAACGACAGGATCTACACTTGTTCAGTCGACATTGGTTCCACCGTGAAGAAGCATGCCGTCTGAGGAGAAAAATCAGAGACATCCTCATGACCG AGTTTCGCAATGCAAGAAAGGAATCGCACTCTTCCAACTAA
AA sequence Show only first row Show all	>Lus10030622 pacid=23140555 polypeptide=Lus10030622 locus=Lus10030622.g ID=Lus10030622.BGIv1.0 annot-version=v1.0 MAEDSSKKRKLILDLDEVVRHTDDNSSIIEVERDNRSSDDRSQRRPTAMESEYPEHYSLKEECSRMGDWKLEETIQRQKKLHANVGKNLPDGGRKIEAAI KIMENEREKRKTQRPRMDADKAKQPAQLANPGLNGTPVGLSKFASSFRKKMEDDDERSDRKPFDKDLSAMGRGLKVKSSDDPSHKARQRNGPSTQPTFQS SEKSSFRSSVDNRGSKNMDITPGNFYSRGERIAKKNSNGIQNIEVPSSHSLRPRKASMKNDMILLTLSLNCLEERVYLSDDDDEVMETVSDGKFDEWGDQ DSVQVQYTDMKCLAPKSMVTSKVMNFYIRYLELQVMPTKKANSHIFSTFFYSKLKRELSDKGSEKESVFVKCRKWWKGINLFEKAYVLIPIHEESHWSLA IICFPEKDDKSDLILLHLDSLELHSSRDIFDVIKSCLREEWKCLHKDIAPSNLQMSENRILTRLPDIYSKSVKVPQQGNDYDCGIFVLYFMQRFIEDAPE RLKRQDLHLFSRHWFHREEACRLRRKIRDILMTEFRNARKESHSSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Lus10030622 [exp]	0	1
AT2G26200			S-adenosyl-L-methionine-depend...		Lus10024993 [exp]	1.0	0.9139
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10037903 [exp]	2.4	0.9060
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10026918 [exp]	3.5	0.9084
AT5G64150			RNA methyltransferase family p...		Lus10015342 [exp]	5.9	0.8851
AT5G50840			unknown protein		Lus10040383 [exp]	6.0	0.8876
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10019524 [exp]	7.2	0.8909
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10020116 [exp]	8.1	0.8689
AT4G29490			Metallopeptidase M24 family pr...		Lus10032694 [exp]	8.5	0.8626
AT4G12010			Disease resistance protein (TI...		Lus10019654 [exp]	8.7	0.8884
AT3G21480			BRCT domain-containing DNA rep...		Lus10038633 [exp]	11.7	0.8800

Compare expression of checked genes

Lus10030622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.