Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60200 281 / 3e-81 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) AT1G71800 46 / 0.0001 CSTF64 cleavage stimulating factor 64 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030866 [exp] 571 / 0 AT1G60200 593 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Lus10029161 [exp] 391 / 2e-121 AT1G60200 566 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Lus10013003 [exp] 389 / 1e-120 AT1G60200 638 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Lus10014814 [exp] 52 / 2e-06 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10017923 [exp] 52 / 2e-06 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10028714 [exp] 50 / 5e-06 AT1G71800 308 / 1e-100 cleavage stimulating factor 64 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147100 [exp] 358 / 1e-109 AT1G60200 323 / 1e-96 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Potri.010G094700 [exp] 345 / 1e-104 AT1G60200 320 / 4e-95 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Potri.002G061200 [exp] 52 / 2e-06 AT1G71800 354 / 3e-117 cleavage stimulating factor 64 (.1) Potri.001G244600 [exp] 45 / 0.0002 AT2G29210 253 / 1e-71 splicing factor PWI domain-containing protein (.1) Potri.009G036900 [exp] 44 / 0.0006 AT2G29210 263 / 6e-75 splicing factor PWI domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01480 [flax] [poplar] PWI PWI domain CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10030623 pacid=23140749 polypeptide=Lus10030623 locus=Lus10030623.g ID=Lus10030623.BGIv1.0 annot-version=v1.0 ATGGCCGATCATCCTCCCTCGACTCCCTCAGCCGCGCCGCCGGACTCCAATCTTCCGCCATCGGCCACCGAAAGCGCCGCTCCTCAGTCGGATCCAGCTC CCGCCTCCTTGGCGCCACCACAATCCTCGATTACGCCATCGCCCAATCCCAACCCTAACCTTACTAACCCCAACCCCGCCAATACTCCGATTCTTCTTCC TACTCCGTCGCCGTTCCCTTCCGCCTACGGTCTCCCGCCGCCGCCAACCATGGCGCCGTCGTTTCGTCCGATTGCGCAATTCACTCCCGTCCCAAGCTAT CAGAATCAGGCCACAGTTGGTGTTCAGCCTCCAGGTACAACAATGACTTCTTCTGCTCCGCCGGTGATGCCTTCTTATCAGCCGCCCAACCAGATTCTGA GGCCTCCGTATGCATCAGTGCCAAACGGTTATCCGCCTGTTCCCGGAGTTGTTCATCAAGGAATCATGGCTCCGCGTGCTATGGTCCGTCCCATATTCAC TCCACGTCCACCTGGCGTGCTTCCGATGACTCGTCCTCTTGTTCCAAATATTCCTGGTGTTCCAAATATTCCTGGTGTTCGTCCTATTATCACTCCTATT ATTAGGCCAGCTGTACCTTCCGTCACCCCAAATGAGAAGCCTCACACTACAGTTTATGTGGGCAAGATATCACCAAGTGTGGAGAATGAGTTCATGCTGT CTCTTCTTCAGCTTTGTGGACCGGTAAAGAGTTGGAAACGTGCCCAAGACCCTAGTGATGGGACACCTAGACGTTTTGGATTTTGTGAATTCGAAAATGC TGAGGGCATTCTCCGTGCATTACGTCTACTCAATCGGTATGTCGAAAAGAAAACTGAAAATTGGAAGAATCTCAGAGAAGGAGCTGACAAGCAGGATAAT GCTCCAGCTGATGCTGATAAGAATCGGCCATCTGAGGCATCTCAGAAGACTGAACTTGCTAACTCTTCCGTAAATGATTCAGAAAAAGATAATGGAAGAG AGGACAAAGCGAATCCTGATCTTGCTAATCTTGGTATTGTAACTGACGAAGATAAAGAAAATGACAAGATGACATTGGAGAAGCTTACTAATATGAAAGA AGAAAGATTGAAGACCAAACCTCTGCCGCCTCCTCCCCCTCTTCCTCCGCTTCCTATTAATGGTTCTGGCAATCCAAATATTGAGCAACTCAAATCAAGG GATGTGGACTCAGACACTGATGCCCTCAGAGATGATGTCCGCGGAGAAAAAAATAATGGTGACCAGGCAAATGAACATGAAAGGTCTGAGGTAAGCTCAC CAGATAATAACAGAAGGTATGATAGAAGCAGCAGAGACAAGGATAAAGATCTTAAAGAAGAAAAAGATCTAGCAATAGACAGATTTGAGAAGGAAGCGGA GCGAGAGAGGGTTCGGAAGGAGAGGGAACTGAGAAGGAAGGTGGAAGAGGCTGAGCGTGAGTACGAAGAACGCTTAAGAGATTGGGAATATAGAGAGAGG GAGAAAGAGAAACAACGGCAATATGAGAAAGAAAGGGAGAAAGAAAAGGAACGCAAGCGGCTAAAGGAGATTCTTCGTGATGAAGAAGATGAATATGATG ATTCGGGGAAAAGATGGCGGAGGAGCATTATAGAGGAGAAGAGAAGGAGAAGACAACGGGAGAAGGAAGACGACTTGGCTGACAGGCTGAAAGAAGAGGA AGAAATCGCTGAAGCCAATAAGATTACTGAAGAGGAAAGAAAGCTGCAACATGAAAAAGATGCTGCGCTGAAACTTCAGACTGCTGATCTCATGAATGGT AATGAAAATGCTGCTTCACCTGATGAAATGGTGGCCGAAAGCAAGCATAAGGTCAGTGGACAAGTTGAGGAGAATGGTGCTTATGATGTTTCAACTGTGC CAATGGCTGAATCAGAAGCACAGCGGGAGAGTACCAATGCTGCCACAAGAAAGTTGGGGTTTGGTTTAGCTGGATCCGGGAAGCGTGCTGCGGTACCTTC AGTTTTCCATGAAGAGGATGATGATGATGCACATAAGGATAAAAAAAGGAGGCCTTTAGTTCCCCTCGATTATACCACAGAGGAATTGCAGGCTGTCGAA CCCCCTACTTCTGAAGCTCAACCTCCGAATCTGGCCGCAGCTGCAGAATATGCGAAGCAGATATCTAATATTGCTCCCAAAGAAGAGAAATCAGAAGGTG GAAGGGAGAGAAGCCATCGCCCTCATGATCGGTCAGGTCGACGTGAGAAACATGACGAGGAGAGTTATCGGTCCAGGGAAGAGAAGGTTGACCGAGAGGG TGGTCTGGATAAGGCGAAGACCCCAGATAAACAGAAGCTTTTAAATGCGAAACAGCTGATTGATATGATCCCGAAGACCAAGGACGAGTTGTTCTCGTAC GAGATTAATTGGGCCATTTACGACAAGCACTCTCTACATGATAAAATGAGACCATGGATTTCGAAGAAGATAACAGAGTTTCTGGGAGAGGAAGAAGCTA CGCTAGTAGATTACGTAGTGTCGAGTATGAAGGAACATGTTAAAGCTGCACAAATGCTGGAGTTGCTTCAGTCCATACTCGACGACGAAGCCGAGATGTT TGTGCTCAAAATGTGGAGGATGCTCATCTTTGAGATTAAGAAGGTCGAGACCGGCCTGGATTTGATGTCTAAATCATAA
AA sequence Show only first row Show all	>Lus10030623 pacid=23140749 polypeptide=Lus10030623 locus=Lus10030623.g ID=Lus10030623.BGIv1.0 annot-version=v1.0 MADHPPSTPSAAPPDSNLPPSATESAAPQSDPAPASLAPPQSSITPSPNPNPNLTNPNPANTPILLPTPSPFPSAYGLPPPPTMAPSFRPIAQFTPVPSY QNQATVGVQPPGTTMTSSAPPVMPSYQPPNQILRPPYASVPNGYPPVPGVVHQGIMAPRAMVRPIFTPRPPGVLPMTRPLVPNIPGVPNIPGVRPIITPI IRPAVPSVTPNEKPHTTVYVGKISPSVENEFMLSLLQLCGPVKSWKRAQDPSDGTPRRFGFCEFENAEGILRALRLLNRYVEKKTENWKNLREGADKQDN APADADKNRPSEASQKTELANSSVNDSEKDNGREDKANPDLANLGIVTDEDKENDKMTLEKLTNMKEERLKTKPLPPPPPLPPLPINGSGNPNIEQLKSR DVDSDTDALRDDVRGEKNNGDQANEHERSEVSSPDNNRRYDRSSRDKDKDLKEEKDLAIDRFEKEAERERVRKERELRRKVEEAEREYEERLRDWEYRER EKEKQRQYEKEREKEKERKRLKEILRDEEDEYDDSGKRWRRSIIEEKRRRRQREKEDDLADRLKEEEEIAEANKITEEERKLQHEKDAALKLQTADLMNG NENAASPDEMVAESKHKVSGQVEENGAYDVSTVPMAESEAQRESTNAATRKLGFGLAGSGKRAAVPSVFHEEDDDDAHKDKKRRPLVPLDYTTEELQAVE PPTSEAQPPNLAAAAEYAKQISNIAPKEEKSEGGRERSHRPHDRSGRREKHDEESYRSREEKVDREGGLDKAKTPDKQKLLNAKQLIDMIPKTKDELFSY EINWAIYDKHSLHDKMRPWISKKITEFLGEEEATLVDYVVSSMKEHVKAAQMLELLQSILDDEAEMFVLKMWRMLIFEIKKVETGLDLMSKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60200			splicing factor PWI domain-con...		Lus10030623 [exp]	0	1
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	3.0	0.8483
AT5G09880			Splicing factor, CC1-like (.1)		Lus10002093 [exp]	4.5	0.8222
AT5G48840		ATPTS, PANC	ARABIDOPSIS THALIANA PANTOTHEN...		Lus10025932 [exp]	4.9	0.8261
AT5G58050		GDPDL6, SVL4	Glycerophosphodiester phosphod...		Lus10000055 [exp]	8.2	0.8234
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	8.7	0.8258
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Lus10016644 [exp]	8.8	0.8146
AT5G57950			26S proteasome regulatory subu...		Lus10022151 [exp]	9.9	0.7510
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019606 [exp]	12.2	0.7964
AT2G04940			scramblase-related (.1)		Lus10010075 [exp]	14.0	0.7822
AT4G05160			AMP-dependent synthetase and l...		Lus10013831 [exp]	15.5	0.7786

Compare expression of checked genes

Lus10030623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.