Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030625 [exp] 418 / 6e-135 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030864 [exp] 100 / 7e-23 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10030865 [exp] 81 / 1e-17 AT3G01460 75 / 6e-15 methyl-CPG-binding domain 9 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030624 pacid=23140681 polypeptide=Lus10030624 locus=Lus10030624.g ID=Lus10030624.BGIv1.0 annot-version=v1.0 ATGCCGATTGCTGACTCTCAACTGCATCAGAATGTTGAAACTCTGAACAGCTATATACTCGGGCATTCCAGTAAACTAAACGAGCATATACAACTTCCCA GACCGCTGGATAATGGATCAAAAGCGGACTCTGAAGCTTGGAGAAACAGTAGCCGAGATGCATTCTTGAAACCCAACGGTGATTTGATACCTACTGTTTC TAATGTTGCGGAAGGACTTTCCATCAATGACGGCAAAAGGACGCACTTGGCTGATCATTGCGGTGCCACACCTGCAGGCTCACGAGATCAGTTCTATGCT CATAACGAGTTCTTCCAGACTGATGGGAAGGACTTGGTCGCCAACGACCATGAGTTGCGCTCCATCAGTAGCGAGATACCCATTCTGAAGAATACGATAT CTCGCTTGGAGTCCAAGTTACTGCTGGTGTCACTGAAAAAAGAGCTGCTGGGGAAGGACTATGCTGGACGGCTATTCTGGGCATTCTACAGGCCAGGTTC AACTCCATGGATCCTGGTTGATTGCAGCATGCTGGCCCAGGAAGATAGCACCAGCAGTGGTCACACCGGCGTTGGGTGTAGCAGTTCAGCTTCCTCATCC TCTCAGAGCGATGCCGAGGAGAATCATCACTTTAAGGTCGGGGCAAGAGAGCCGAAACCTAAATGGTTCTCTTGTCAGTCAGAAGCAGAGGTGAGTGAGC TGATTAGATGGCTGAGATGTTTTGAGCCTATGGACAATGACTTCATAGTCAGTAGCAGCTGCATCATCGCCTTGTCTCAGCGACCCAAGATTAAAGCTTG GCAGAAGTGCAGAGGGCTCAAGGGATCAAGCTGTTTGAAATCAGGAAATCCTCCGTCTCTGACTCGTGATACGTCGCTGAGGCCAGTAACAGGAAGAGAG GTCCAGTTTCTTAGACAACTCGAAATCTGCCTACTCGACATTGATGCTAGCCCTGTATGA
AA sequence Show only first row Show all	>Lus10030624 pacid=23140681 polypeptide=Lus10030624 locus=Lus10030624.g ID=Lus10030624.BGIv1.0 annot-version=v1.0 MPIADSQLHQNVETLNSYILGHSSKLNEHIQLPRPLDNGSKADSEAWRNSSRDAFLKPNGDLIPTVSNVAEGLSINDGKRTHLADHCGATPAGSRDQFYA HNEFFQTDGKDLVANDHELRSISSEIPILKNTISRLESKLLLVSLKKELLGKDYAGRLFWAFYRPGSTPWILVDCSMLAQEDSTSSGHTGVGCSSSASSS SQSDAEENHHFKVGAREPKPKWFSCQSEAEVSELIRWLRCFEPMDNDFIVSSSCIIALSQRPKIKAWQKCRGLKGSSCLKSGNPPSLTRDTSLRPVTGRE VQFLRQLEICLLDIDASPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030624 [exp]	0	1
AT5G23200			unknown protein		Lus10017393 [exp]	2.4	0.7932
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10014863 [exp]	4.6	0.8127
AT1G49480	B3	REM19, RTV1	related to vernalization1 1 (....		Lus10009214 [exp]	5.7	0.7866
AT3G22470			Pentatricopeptide repeat (PPR)...		Lus10003426 [exp]	7.5	0.7781
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10017819 [exp]	7.7	0.7865
AT3G49990			unknown protein		Lus10015447 [exp]	8.8	0.7952
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Lus10003446 [exp]	13.5	0.6576
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	14.1	0.7839
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10010842 [exp]	15.2	0.7833
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10040013 [exp]	17.5	0.7495

Compare expression of checked genes

Lus10030624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.