Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01460 596 / 0 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT1G77250 66 / 1e-10 RING/FYVE/PHD-type zinc finger family protein (.1) AT5G24330 64 / 4e-10 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT5G09790 60 / 8e-09 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT5G44800 61 / 9e-09 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT5G35210 56 / 3e-07 metalloendopeptidases;zinc ion binding;DNA binding (.1.2) AT3G05670 54 / 9e-07 RING/U-box protein (.1) AT5G22760 54 / 1e-06 PHD finger family protein (.1) AT4G12620 53 / 2e-06 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1) AT4G14700 51 / 7e-06 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030864 [exp] 1721 / 0 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10008796 [exp] 544 / 2e-162 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030624 [exp] 432 / 4e-139 AT3G01460 59 / 2e-09 methyl-CPG-binding domain 9 (.1) Lus10030865 [exp] 357 / 1e-112 AT3G01460 75 / 6e-15 methyl-CPG-binding domain 9 (.1) Lus10022224 [exp] 289 / 1e-78 AT3G01460 990 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10042764 [exp] 70 / 1e-11 AT1G77250 301 / 1e-95 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10029733 [exp] 67 / 1e-10 AT1G77250 313 / 5e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10028655 [exp] 64 / 6e-10 AT1G77250 259 / 1e-79 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10000973 [exp] 64 / 8e-10 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G072460 [exp] 484 / 2e-147 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.017G072580 [exp] 114 / 3e-25 AT3G01460 705 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.002G076900 [exp] 67 / 9e-11 AT1G77250 332 / 3e-107 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.005G183700 [exp] 65 / 3e-10 AT1G77250 315 / 2e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.003G126600 [exp] 64 / 7e-10 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.012G018300 [exp] 63 / 8e-10 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.015G009632 [exp] 63 / 8e-10 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.003G110100 [exp] 58 / 6e-08 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.001G123400 [exp] 57 / 1e-07 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.005G021000 [exp] 55 / 4e-07 AT3G05670 436 / 2e-140 RING/U-box protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10030625 pacid=23140648 polypeptide=Lus10030625 locus=Lus10030625.g ID=Lus10030625.BGIv1.0 annot-version=v1.0 ATGGAGCTGCCGAGAAGTAATTGCAACGTCGAGGAGGAGGTGGCAGAGGGAAGGAGCAGTTCAGCCGCGGCCGTGCCGTTCGAGATCGATCTGAACGAGG CGCCTGTCGACTGTTTGCCTGTCGAGGATGGCGACGGCTCACTGCCTGATGCGGCGGCGGAGAGCTGCCGTAGGAAAGGGAAACGGCCGCTATTTGACAT CAATGAGATGCCGTGCGATGGGGAGAGAGACGGAGAAGCGACCGGCGGTGATTCGGTTACCGATTGGAGATTGTCCGATGAGCGTAGAGCTTCTTCTAAC TATGCTCAGGCGACGAGTAGCAAATTATTGTTCGGCCAGAATATCTTTGATAACATAACAACACCTGCCCGTTTGCCAAGTTTTCTCAGCCCGGGAGGTT TAGGTAATGTACATTTAGGAATAAACAATTGTGGAAGTCCACAGAAGATAGATACACCATTTATGGTTATAGAGAAACAATGGCCAAGCCCTGATTTGGC TCATACAGAAGCAGATGGGAGTCGAAGTTGTGCATCCACTATTCGAGCATGTCAAGTACCTGGGACAGCGAATATCCAAATGAATTCTTTGGAAATCCCC CTCCCTCCTATCAAGCCATTGGCTTCAAGCCTTCCTGTAGATTTAATTGGTGATGCTCTTCAGTCATGGGAAGTACTGTGGCGGTTCTCAGAAGTTTTGG AAATGGAAAAATCGATATCTTTTCCGGAATTTGAAGAGGCACTTGCAAATGTTTATCCCATGACTCGTATGAATTCTGGTTCAACAGCTAACAGGGGAAG TATTACCTCAACTTCTGAAACTATGACAGCGGCTACCGATATGGGACAGTTGTGTAATTCACATATGTGTGCCACTGGGAGTTTGACTCTGGCTCACTGT TCACTGATGAGAGTTATATTGGCTGATCTACATGGAAAATTGTGTACTCTCACAGATCCTACTTTTGATAGAAGGAGGAAGAAGGCAGACACTTTGAATT TGTTTAAGGCAACTATGCTTCATTTCCTGCCAATAAATGAACTTACTTGGCCAGAACTAGCTCGAAGATATTTATTGACTCTCTCATCCATGGATGGAAA CCTTGAGTCTGTGGAGACAGTTAGTCGAGAGAGCCGTAAAGTTTTTCACTATTTACGAGGTGCTACAGGTGTGCTTTCCAGTTCAATTCCCGGCTTCGAG GAAGTGGAAGATGAGGCACTGTTGGATGCAGAGGCTGCTAAGAAAATCTTTTGCTCGAATGACTCTAATGAGCTGCCTTGCGAAAATGTTAACCTGAGCA GTGAGGATATTCCTGATTGGGCACGAGTGCTAATACCTGCCAAAACTCTAGCAACGAATGTGGGGGCCAGGATTCGGAAGCTTGTCCACGAGGCTTTGGC TAAAATTCCTCCTGAATGGGCTAAGAGAGAATTGGAACGGTCTATCAGTAAGGCAGTTTACAAAGGAAATGCTGCAGGGCCCACTAAGGCCATTGTTAAA TCGGTATTGAGGAGGGTTACTGGTGAAGAAGAGCCAGATAAACCAAGCAGAAAGAGCAGAATCAAGTGCGCTACTACAATACCTGATTTGATCATGAGTC AGTGCCAAAAAGTTCTTCACCTTGCCCTTGCGGCTGATAAGGAGAAAGTCTTCTGTGATTTGGTGGGAAGAACCTTTCTCAATGCATCTGATCGTGATAA TGAGAGATTACATGGACATGCTGCTACGCCATCTCGTCCTTTGGACTTCAGAAAGATTGATTTTAAATTAACTGCTGGAGCCTATGGGGAATCATATGAA GCTTTCACAGAGGATGTTCGAGGGGTTTGGAATCAAATAATTGCTGCCGAGGCCGATCACTCCCATCGGGTCCAATTGGCCAAGACATTGTCTCAAAATT TTGAAGCACTTTATGCACAACAGGTTGTCCCTCTTGTGCACAAGCTGAAGGGGAAAAATAAAATAAAAACCTCAGGGCGCAAAAATGAAATAGTAGATGT TCTTGATAGTGGAAGTCAGATTCCAGAGGGTCATGCAAATGAAGGGATTTGTAGAGCATGTGGCATCGATAAGGATGACACTAATGTTCTACTGTGTGAT CATTGTGATTCTGGTTACCATACATACTGCTTAAATCCTCCACTTATGCGCATCCCTGCTGGTAATTGGTACTGTCCTCTATGTACTCCTAGTCAACCCA TGGAAGATGATGCTACACAAATTCCTCCATTAGTTATGAAGGGAATGAAAAAGGCCGGTCATGGTGATCTCAATACAACCATGGGAGTGAACGATTACTG GGACTACAGCACAAAGGAGAGAGTCCAGCTTCTGAAATTATTGACTGAAGAAGTCGTGAGCTCCAGCAGCATCAGGCACCACCTTGACCAATGTACCATA ATCTCTGCGGATCTGCAGCAGAAAGTACGATCAGTTTCTGTAGAACTGGGACAGTTGAAGTGCAGAGAAAAAATCCTAGCAAACAAGGAGGCAAAAGCAA ATACCAATATGTTCAACAGTTTTGGCTGGCCTAGAGCAGGTGGGGAGACTAACTGGCCTGCATCTTTTGTGAAACTGATGGGATGCAATGGAAGCACCTC ATATCCATCTGACTGTTCGGAGAATGTTGCCCTGAGGCATGGAATGGACACATTCAAACAACCAGCATTGCATCCGGCCCTCCTTTCGGAGCAATGTCAT CCCAGCAGTGGAAGGACATTCCTGCAGATGCCGATTGATGACACTCCACTGCGTCAGAATGCTGAAACTCTGAACAGCTATATACTCGGGCATTCCAGTA TACTAAACGAGCATGTACAACTTCCCAGACAGCTGGATAATGGATCAAATGCAGACTCTGAAGTTTGGAGAAACAATAGCCGGGATGCATTCTTGAAACC CAACGGTGATTTCATACCTACTGTTTCTCATGTTGGGGATGGACTTGCCATCAATGACGCCAGAAGGACGCACTTCGCTGATCATTGTGGTGCCACACCT GCAGGCTCACGAGATCAGTTCAATGCTCATAACGAGTTCTTCCAGACTGATGGGAAGGACTTGGTCGCCAACGACCATGAGTTGTGCTCCATCAGTAGCG AGATATCCATTCTGAAGAATACGATATCTCGCTTGGAGTCCAAATTACTGCTGGCGTCACCGAGAAAAGAGCTGCTGGGGAAGGACTATGCTGGACGGCT ATTCTGGGCATTCTACAGACCAGGTTCAACTCCATGGATCCTGGTTGATTGCAGCATGCTGGCCCAGGAAGATAGCACCAGCAGTGGTCACACCGGTGTT GGGTGTAGCAGTTCAGCTTCCTCATCCTCTCAGAGTGATGCAGAGGAGAATCATCACTTTAAGGTCGGGGCAAGAGAGCCGAAACTTAAATGGTTCTCTT GTCAGTCAGAAGCAGAGGTGAATGAGCTGATTAGATGGCTGAGATGTTTTGAGCCTATGGACAATGACTTCATAGAGTCCTTACTGCGGCTTCAAAAATT TGAATTTGTGGAACCTGCCAATGTTGGGGACATTGGTCAGGACACATCTCAGTTAACTTTGACGCCCAAAACCACTGAAATGGCTGGCAAGTTTTGCTCT CTTGCAACGAGAGCTTTGATCTCAATGGAGAGAAGATACGGTCCTTGCTCGAAGACTGATGGGATGGTCATCTCGGTGGACAAGCTGCTGGATGAGGAAG AAAACAAAAAGGCAGTAATGTACCGTTGTGGATGCTTGGAGCTGGTATGGACGTCCAGGCATCATTGTCGACTCTGTCACATGACGTTTTCATCCAGCTC TGGAATTAAGGCGCACAATGACGTCGAGTGTAGTTCTGGGGCCAGTGCGTCTGAGAGTGCGCAGCTGAAGGAGAAATCTGCAGAAGCTAAAGCTGTGCTG GGAGAACAAGAGGAGTGCTCTGAGGAAGCAACTCCAAGTAATGTAGGCACAGCCCCTGGCACCGGCTCTGAGCTAGACGGGGTGAAAAAATGTGGCGCGT CCCCTTACGAACTTAAAACAGTAAGTGCAAAGTTCGTCACTCAGAGCTCGAACAAGGTGCTGGTGAAGCAGATTGGGCTTCTCGGTTCAGATGGGATCCC ATCATTACTAGCAGCTGCAGCATCACCTTGTCTCAGCGACCCAAGCTTAAAGCTTGCTAGAGGTACAGAGGGTTCAGGGGAATCAAGCTGTTTGAAATCA GGAAACCTTCTGTCTCTGACCTATGATTCGTCGCTGAGGCTGGTAACGGGAAAAGAGGCCCAATTTCTCAGACAGCTCAAAATCTGCCTACTGGACATTG ATGCTGGCCTGCACGATGCAGCCCTGAAGCCTTCCAATGCTGAATGTGGAAGAAGGCGTGCCTGGCGGGAGGATATCAAGTCTGCTAAGTCAATAAATGA GATGGTTAAAGCGACACTGGCGCTCGAGAACGCGATCAAAGCTAATTACCTGAGAAGGGAATGGTGGTTCTGGTCGCCCCCTTCCGCCTTATTGAGGATC GCTACAATCTCTGCTCTAGCACTCAGGATATACACTTTGGACGCAGCAATCCTCTACGAGAAGCCTCTTCCTCCAGCGATAAAACCTGCAGACAACATCG ACAGTCAGAACCCAGATGGAAGCTCATCAGACGACCGTACAATTTCTGCAACTGATCCAGTTCCAAGCAACAGCAACATACCAGCAGCTCAGAGTTCGAA ACGCCCGAGAGTCTGGAAGTCGGCAAAACAAAAAGGTGAAGCCAGCACTGCAAAGGGAGCGAACAATTGA
AA sequence Show only first row Show all	>Lus10030625 pacid=23140648 polypeptide=Lus10030625 locus=Lus10030625.g ID=Lus10030625.BGIv1.0 annot-version=v1.0 MELPRSNCNVEEEVAEGRSSSAAAVPFEIDLNEAPVDCLPVEDGDGSLPDAAAESCRRKGKRPLFDINEMPCDGERDGEATGGDSVTDWRLSDERRASSN YAQATSSKLLFGQNIFDNITTPARLPSFLSPGGLGNVHLGINNCGSPQKIDTPFMVIEKQWPSPDLAHTEADGSRSCASTIRACQVPGTANIQMNSLEIP LPPIKPLASSLPVDLIGDALQSWEVLWRFSEVLEMEKSISFPEFEEALANVYPMTRMNSGSTANRGSITSTSETMTAATDMGQLCNSHMCATGSLTLAHC SLMRVILADLHGKLCTLTDPTFDRRRKKADTLNLFKATMLHFLPINELTWPELARRYLLTLSSMDGNLESVETVSRESRKVFHYLRGATGVLSSSIPGFE EVEDEALLDAEAAKKIFCSNDSNELPCENVNLSSEDIPDWARVLIPAKTLATNVGARIRKLVHEALAKIPPEWAKRELERSISKAVYKGNAAGPTKAIVK SVLRRVTGEEEPDKPSRKSRIKCATTIPDLIMSQCQKVLHLALAADKEKVFCDLVGRTFLNASDRDNERLHGHAATPSRPLDFRKIDFKLTAGAYGESYE AFTEDVRGVWNQIIAAEADHSHRVQLAKTLSQNFEALYAQQVVPLVHKLKGKNKIKTSGRKNEIVDVLDSGSQIPEGHANEGICRACGIDKDDTNVLLCD HCDSGYHTYCLNPPLMRIPAGNWYCPLCTPSQPMEDDATQIPPLVMKGMKKAGHGDLNTTMGVNDYWDYSTKERVQLLKLLTEEVVSSSSIRHHLDQCTI ISADLQQKVRSVSVELGQLKCREKILANKEAKANTNMFNSFGWPRAGGETNWPASFVKLMGCNGSTSYPSDCSENVALRHGMDTFKQPALHPALLSEQCH PSSGRTFLQMPIDDTPLRQNAETLNSYILGHSSILNEHVQLPRQLDNGSNADSEVWRNNSRDAFLKPNGDFIPTVSHVGDGLAINDARRTHFADHCGATP AGSRDQFNAHNEFFQTDGKDLVANDHELCSISSEISILKNTISRLESKLLLASPRKELLGKDYAGRLFWAFYRPGSTPWILVDCSMLAQEDSTSSGHTGV GCSSSASSSSQSDAEENHHFKVGAREPKLKWFSCQSEAEVNELIRWLRCFEPMDNDFIESLLRLQKFEFVEPANVGDIGQDTSQLTLTPKTTEMAGKFCS LATRALISMERRYGPCSKTDGMVISVDKLLDEEENKKAVMYRCGCLELVWTSRHHCRLCHMTFSSSSGIKAHNDVECSSGASASESAQLKEKSAEAKAVL GEQEECSEEATPSNVGTAPGTGSELDGVKKCGASPYELKTVSAKFVTQSSNKVLVKQIGLLGSDGIPSLLAAAASPCLSDPSLKLARGTEGSGESSCLKS GNLLSLTYDSSLRLVTGKEAQFLRQLKICLLDIDAGLHDAALKPSNAECGRRRAWREDIKSAKSINEMVKATLALENAIKANYLRREWWFWSPPSALLRI ATISALALRIYTLDAAILYEKPLPPAIKPADNIDSQNPDGSSSDDRTISATDPVPSNSNIPAAQSSKRPRVWKSAKQKGEASTAKGANN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030625 [exp]	0	1
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10015946 [exp]	4.6	0.9140
AT3G13225			WW domain-containing protein (...		Lus10005845 [exp]	5.0	0.8961
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10023288 [exp]	5.1	0.9082
AT3G04820			Pseudouridine synthase family ...		Lus10015931 [exp]	6.2	0.8904
AT4G38440		IYO	MINIYO, unknown protein		Lus10025099 [exp]	6.6	0.8915
AT2G46200			unknown protein		Lus10000549 [exp]	6.7	0.8929
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10028066 [exp]	6.9	0.8976
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10030445 [exp]	9.5	0.8876
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019393 [exp]	9.9	0.8607
AT5G15270			RNA-binding KH domain-containi...		Lus10005232 [exp]	10.6	0.8870

Compare expression of checked genes

Lus10030625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.