Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54380 117 / 3e-28 THE1 THESEUS1, protein kinase family protein (.1) AT2G01820 115 / 1e-27 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT1G76370 110 / 9e-27 Protein kinase superfamily protein (.1) AT5G24010 112 / 1e-26 Protein kinase superfamily protein (.1) AT3G45420 112 / 1e-26 Concanavalin A-like lectin protein kinase family protein (.1) AT3G46290 112 / 2e-26 HERK1 hercules receptor kinase 1 (.1) AT1G16130 111 / 2e-26 WAKL2 wall associated kinase-like 2 (.1) AT5G59700 111 / 3e-26 Protein kinase superfamily protein (.1) AT1G53430 110 / 5e-26 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G20650 108 / 5e-26 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030863 [exp] 581 / 0 AT1G09440 163 / 2e-42 Protein kinase superfamily protein (.1) Lus10003274 [exp] 148 / 4e-39 AT1G70530 205 / 4e-59 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10006544 [exp] 145 / 7e-38 AT3G59110 205 / 1e-57 Protein kinase superfamily protein (.1) Lus10012101 [exp] 122 / 7e-30 AT2G23200 494 / 2e-162 Protein kinase superfamily protein (.1) Lus10010443 [exp] 121 / 1e-29 AT2G23200 498 / 6e-164 Protein kinase superfamily protein (.1) Lus10038595 [exp] 115 / 2e-28 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10008187 [exp] 114 / 3e-27 AT2G48010 660 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10031582 [exp] 114 / 3e-27 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10028140 [exp] 113 / 7e-27 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G053001 [exp] 144 / 1e-37 AT1G79620 201 / 5e-55 Leucine-rich repeat protein kinase family protein (.1) Potri.019G030600 [exp] 142 / 3e-37 AT1G24030 191 / 2e-55 Protein kinase superfamily protein (.1.2) Potri.001G041012 [exp] 118 / 7e-29 AT1G79670 501 / 6e-171 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) Potri.001G405500 [exp] 118 / 1e-28 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.005G203401 [exp] 114 / 2e-28 AT1G16120 402 / 1e-134 wall associated kinase-like 1 (.1) Potri.011G128000 [exp] 117 / 3e-28 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.018G107901 [exp] 116 / 3e-28 AT1G51830 164 / 2e-43 Leucine-rich repeat protein kinase family protein (.1) Potri.011G072691 [exp] 114 / 6e-28 AT1G29750 514 / 2e-174 receptor-like kinase in flowers 1 (.1.2) Potri.004G063900 [exp] 114 / 1e-27 AT1G07650 477 / 2e-159 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G040756 [exp] 112 / 2e-27 AT1G69730 448 / 3e-152 Wall-associated kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10030626 pacid=23140578 polypeptide=Lus10030626 locus=Lus10030626.g ID=Lus10030626.BGIv1.0 annot-version=v1.0 ATGAACCTCCAACACCTCAAAGCCCTTTCCTTTTCTTCAACCCTCTTCACCATTTTCATCCTCCTCCTAAACCCACTTCCCCCCATCTCCTCCCAATCCT GCATCATCGAACTCAACCCTCCCACCATTGAATCCACCAAACCCTGCAACGACAGTCAACCAACCTGGGGAGGCTTCATCGATGGCGGAAACTGCTGTAC ATCTTCTTTCAACGATTACCTCTTCGGATTGGCCCAATGGGCTTTTCAATCGGGCCAGATTTTCCTCAACTCTACTGACCAGAGCATCTGCTTGAGTAGC AGCGACAAGAATAATCTGGGTTCTTGCGGATTTGATAGGCTTACCAGCGGAGGAACCAATGGTGGTGAGTGTTCTAGCTACACAGTGGCTGATGTGGCTT CCAAGCTGGATGCTGAGCTGGAATCCATGTACGAGAACTGCAATCTGACGGCCGGCGGTGGAGGGTGCGGAGGATGTGGCGAGAAGTGGGGGGAGATTGG GGAGTCGCTGAACCATGGGTCGAAGTTGGAAGCTGATGTTTGTAGGTTCGCGGTTTTGGTCACGTTGACCAGTAATTGGGTTGGATCGTCCAGAGACAAA ATTGAGGAAATTTATGATTGCCTCTCTCAGGGTATCCTGATTGCGAGCATTACCATTGGCGCATTAGTGGCGATAATCGTGGTTCTGCTGTGGATCATTA GCAGAAGGAAGGCTAAGCAAGCTCGGACATCAGCTAAATCAGGTTCCTTTAGCAAAGCATCACAGGAGCTCAAGTTCAAGCAGGCCAACAAGCTCAAGAT ATCAATCAAGGAGATCTACTCTGCCACGAATCACCTCGACGAATCCAACTACATTGGCCAAGGAATCGCCGGAAAGGTTTACAAAGGGACTATGTCCGAT GGGCAGGCGGTTGCAGTGAAGCACATAGTGAACGATGGACACGTCGAGACATTCGTGAGAGAAGTCACGAGTCTTTCTCACGTAAGGCATCCAAATCTCG TAGCTTTGATCGGCTGCTGCAAGCATGAAGATGAGTACTTTTTGGTGTATGAGCTCTGTAAAAATGGGAACTTATCAGAATGGCTCTACAGCAAAGAGAG GAGCCTTTCATGGATTCAGAGGATCGAGACTGCGATCGACTGCGCTAGAGGCCTGTGGTTCCTTCACACTTACCCTAGTGGCAGCATCGTTCATCGCGAC ATCAAGGCATAG
AA sequence Show only first row Show all	>Lus10030626 pacid=23140578 polypeptide=Lus10030626 locus=Lus10030626.g ID=Lus10030626.BGIv1.0 annot-version=v1.0 MNLQHLKALSFSSTLFTIFILLLNPLPPISSQSCIIELNPPTIESTKPCNDSQPTWGGFIDGGNCCTSSFNDYLFGLAQWAFQSGQIFLNSTDQSICLSS SDKNNLGSCGFDRLTSGGTNGGECSSYTVADVASKLDAELESMYENCNLTAGGGGCGGCGEKWGEIGESLNHGSKLEADVCRFAVLVTLTSNWVGSSRDK IEEIYDCLSQGILIASITIGALVAIIVVLLWIISRRKAKQARTSAKSGSFSKASQELKFKQANKLKISIKEIYSATNHLDESNYIGQGIAGKVYKGTMSD GQAVAVKHIVNDGHVETFVREVTSLSHVRHPNLVALIGCCKHEDEYFLVYELCKNGNLSEWLYSKERSLSWIQRIETAIDCARGLWFLHTYPSGSIVHRD IKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53440			Leucine-rich repeat transmembr...		Lus10030626 [exp]	0	1
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10016180 [exp]	5.3	0.7394
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001432 [exp]	8.9	0.7192
					Lus10018446 [exp]	12.5	0.6915
					Lus10001825 [exp]	14.7	0.7112
AT5G49180			Plant invertase/pectin methyle...		Lus10003968 [exp]	16.2	0.6663
AT2G41970			Protein kinase superfamily pro...		Lus10017242 [exp]	18.8	0.6787
AT5G65090		DER4, MRH3, BST...	DEFORMED ROOT HAIRS 4, BRISTLE...		Lus10041708 [exp]	20.3	0.6442
AT1G32730			unknown protein		Lus10011037 [exp]	23.7	0.6352
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10025597 [exp]	25.8	0.6518
AT1G45688			unknown protein		Lus10023652 [exp]	26.5	0.5637

Compare expression of checked genes

Lus10030626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.