Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55450 96 / 8e-24 PBL1 PBS1-like 1 (.1.2) AT3G46350 94 / 6e-23 Leucine-rich repeat protein kinase family protein (.1) AT1G07550 92 / 2e-22 Leucine-rich repeat protein kinase family protein (.1) AT1G51890 90 / 1e-21 Leucine-rich repeat protein kinase family protein (.1.2) AT3G59420 90 / 2e-21 ACR4 crinkly4 (.1) AT1G51870 90 / 2e-21 protein kinase family protein (.1) AT1G49100 89 / 5e-21 Leucine-rich repeat protein kinase family protein (.1) AT5G02290 87 / 8e-21 NAK Protein kinase superfamily protein (.1.2) AT1G51860 87 / 1e-20 Leucine-rich repeat protein kinase family protein (.1) AT2G11520 86 / 2e-20 CRCK3 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030863 [exp] 301 / 5e-101 AT1G09440 163 / 2e-42 Protein kinase superfamily protein (.1) Lus10006544 [exp] 115 / 3e-30 AT3G59110 205 / 1e-57 Protein kinase superfamily protein (.1) Lus10003274 [exp] 110 / 8e-29 AT1G70530 205 / 4e-59 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10019237 [exp] 91 / 9e-22 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10002697 [exp] 89 / 2e-21 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10014387 [exp] 89 / 5e-21 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10003942 [exp] 89 / 5e-21 AT3G51550 656 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10023794 [exp] 87 / 5e-21 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10034757 [exp] 88 / 7e-21 AT1G61590 624 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G030600 [exp] 107 / 8e-28 AT1G24030 191 / 2e-55 Protein kinase superfamily protein (.1.2) Potri.013G053001 [exp] 100 / 4e-25 AT1G79620 201 / 5e-55 Leucine-rich repeat protein kinase family protein (.1) Potri.006G220100 [exp] 90 / 2e-21 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Potri.009G031300 [exp] 89 / 2e-21 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.003G185750 [exp] 89 / 3e-21 AT1G16260 559 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185800 [exp] 89 / 3e-21 AT1G16260 530 / 7e-180 Wall-associated kinase family protein (.1.2) Potri.003G185732 [exp] 89 / 3e-21 AT1G17910 446 / 8e-150 Wall-associated kinase family protein (.1) Potri.003G185850 [exp] 89 / 3e-21 AT1G69730 535 / 1e-180 Wall-associated kinase family protein (.1) Potri.019G094600 [exp] 89 / 4e-21 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.006G118500 [exp] 89 / 5e-21 AT5G02070 577 / 0.0 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10030627 pacid=23140753 polypeptide=Lus10030627 locus=Lus10030627.g ID=Lus10030627.BGIv1.0 annot-version=v1.0 ATGAACTTGGGACAGTCCTTTGTGAGCTCGGAAGTTCGAGGAACATTCGGCTATGTGGATCCGGAGTATCAGAGGAACCACCACGTAAACGCGAAGGGAG ATGTGTACAGCTTTGGAATCGTGCTGATGCAGCTTCTGTCTGGACAGAAGGTGATCAACATGAACCACAACACACACATGCAACTAAACAAGAAGGCGTC GTTTCTTGCTGCGAATGGGAAAGTAGCGGAATTTGCAGATCCGAAACTCAACGGGGAGTATTCGGTGGAAGCTTTCGAGATAATATTCAAACTGGCAGTT AAGTGCTCAGGGCGTAAGCAGGACAGGCCGACAATGGAGACAGTGGTAAGAAGGCTAGAGAAAGCACACGAAATCTCGGTGAGATTATCGAACGAAAGAA GCATGAACATCTCGATGATTTACGACAGAAGCATCAACATCGAACCAAGCTGA
AA sequence Show only first row Show all	>Lus10030627 pacid=23140753 polypeptide=Lus10030627 locus=Lus10030627.g ID=Lus10030627.BGIv1.0 annot-version=v1.0 MNLGQSFVSSEVRGTFGYVDPEYQRNHHVNAKGDVYSFGIVLMQLLSGQKVINMNHNTHMQLNKKASFLAANGKVAEFADPKLNGEYSVEAFEIIFKLAV KCSGRKQDRPTMETVVRRLEKAHEISVRLSNERSMNISMIYDRSINIEPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46350			Leucine-rich repeat protein ki...		Lus10030627 [exp]	0	1
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10024706 [exp]	9.9	0.6225
AT3G44220			Late embryogenesis abundant (L...		Lus10005214 [exp]	24.2	0.5928
AT5G25530			DNAJ heat shock family protein...		Lus10041254 [exp]	28.2	0.5472
AT5G42905			Polynucleotidyl transferase, r...		Lus10007550 [exp]	33.2	0.5341
AT5G17680			disease resistance protein (TI...		Lus10012852 [exp]	35.1	0.5629
AT3G15810			Protein of unknown function (D...		Lus10006656 [exp]	39.2	0.5464
AT1G72020			unknown protein		Lus10009443 [exp]	43.5	0.5638
AT5G52390			PAR1 protein (.1)		Lus10040714 [exp]	62.0	0.5328
AT3G09110			Protein of unknown function (D...		Lus10003163 [exp]	72.6	0.4930
AT3G24650	B3	SIS10, ABI3	SUGAR INSENSITIVE 10, ABSCISIC...		Lus10011888 [exp]	77.5	0.5108

Compare expression of checked genes

Lus10030627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.