Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60190 526 / 4e-179 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1) AT1G10560 502 / 9e-170 ATPUB18 ARABIDOPSIS THALIANA PLANT U-BOX 18, plant U-box 18 (.1) AT1G29340 268 / 1e-79 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT5G01830 244 / 5e-71 ARM repeat superfamily protein (.1) AT3G54850 218 / 7e-62 ATPUB14 plant U-box 14 (.1) AT3G46510 207 / 1e-57 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G71020 205 / 2e-57 ARM repeat superfamily protein (.1.2) AT1G23030 204 / 3e-57 PUB11 ARM repeat superfamily protein (.1) AT2G28830 202 / 1e-54 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 188 / 4e-51 PUB15 Plant U-Box 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030862 [exp] 1175 / 0 AT1G60190 522 / 1e-177 plant U-box 19, ARM repeat superfamily protein (.1) Lus10029163 [exp] 890 / 0 AT1G60190 571 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10013001 [exp] 876 / 0 AT1G60190 562 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10007511 [exp] 311 / 2e-96 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10007317 [exp] 289 / 2e-87 AT1G29340 899 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10017444 [exp] 286 / 8e-87 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10006090 [exp] 262 / 9e-78 AT5G01830 764 / 0.0 ARM repeat superfamily protein (.1) Lus10025244 [exp] 255 / 3e-75 AT5G01830 765 / 0.0 ARM repeat superfamily protein (.1) Lus10040834 [exp] 236 / 2e-68 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G074200 [exp] 591 / 0 AT1G60190 501 / 2e-169 plant U-box 19, ARM repeat superfamily protein (.1) Potri.012G078900 [exp] 588 / 0 AT1G60190 513 / 3e-174 plant U-box 19, ARM repeat superfamily protein (.1) Potri.011G071400 [exp] 284 / 9e-86 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.004G061800 [exp] 278 / 2e-83 AT1G29340 833 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.010G185900 [exp] 273 / 9e-82 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.016G134000 [exp] 262 / 9e-78 AT5G01830 702 / 0.0 ARM repeat superfamily protein (.1) Potri.008G071600 [exp] 262 / 9e-78 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.006G107600 [exp] 259 / 1e-76 AT5G01830 729 / 0.0 ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 240 / 1e-69 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.010G226500 [exp] 237 / 6e-69 AT3G54850 806 / 0.0 plant U-box 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10030628 pacid=23140568 polypeptide=Lus10030628 locus=Lus10030628.g ID=Lus10030628.BGIv1.0 annot-version=v1.0 ATGCACAAAACATACAAGGGCACACCCCCCCGGATTCTCCCCTTCCCGGCGGTCCACCCCTGCCGGAGCATCACTCCGGAAACTCTCATCGCCTCCTTGA TCGGCCTCTGCCGTTCTGTCACCGAATACAGAACCAAGCAGTTCGGCAGCAATGTGCGGAACGCAAGGGAAACGGCTCGTCAGATATACAACCTCGTTAT ACTGCTCGAGGACATTCAGGAATCGTGTTCGTTCATTCCTGATTCGGTCCTCGTCGGACTTTCGAACCTTCATTTGACGGTCCAGAAGGTCCGGTACCTG CTGGAGGACTGCGCTCGGGAAGGTGCTCGGATGTGGATGCTGATGAAGTCGGATCTGGTCGCTAGCCAGTTCCATTCTCTAGTTCGGAGATTGGAGATTC TTCCGATCAAGGATCTCGATCTTTCAGACGAAGCGATTGAGCTCGCCGAACTGGTGATGAGGCAAGCGCGGAATGCGAGATTCGAAGTCCGAGCGGATGA CGAAGTAGCCATGGGCGACGTATCGATGATGTTAAGCCGATTCGAGAGCGGCGGTGTTCCTGATCGTGATGAGATGAAGCGAGTTATGGATTACATCGGT GTGAAGAAATGGAGCGACTGTTACAGGGAGGTAAAGTTCTTGGACTCCGAGATTGAGTTTCATTTTTCGAATCCAGAAATGAAAGGAGAATTAGAGCTTT TGAGTAGGTTGCTAGGTTTAATGAACTACTCTAGGTGCGTGTTCTTTGATTCCATCAACGGCAAATCAATCCTGCCGATTGGTGAGGCTAAAGCTAGAGA TGAGTTGCTTGATTGTCTCAACAGCGACGATTTCCTTTGTCCGATTTCTCTCGAGCTCATGAGGGATCCAGTCACTATAGTGACTGGACACACTTACGAT CGGTGTTCGATCGTCAAGTGGTTCAGAGCTGGAAATGCGACTTGTCCCAACACAGGGAACAAGCTGCTGAGTACAGAGTTTGTACCTAACGTTGCTCTGA AGCAGTTGATTCAACTCTACTGCATTGAGAACGGGATCCAAGTTCCTGAATTGAATCGTAAGAGTCGAGACATTACCAGGACCGCCAATCCAGGGAGCTT GGTTGAGGAACTGGCTATGAAAGCTATAGCCAGTTTTCTTGCTGGGGAGCTGGTTCATGGAGATGTTAAAGGAAAGAACAAAGCAGCTTACGAGATCCGG CTTCTTAGCAAATCAAGCATCTTTTACAGGTCTTGTTTATTGGAAGCTGGAGTTATTCCTTCTCTTTTGAAACTACTATTGTCAAAAGATGGTTCTTCTC AAGAAAATGCCATCGCAGCCCTTCTGAATCTTTCAAAGCATTCCAAGAGTAAAGCTTTGATCTTTGACAATGGAGGGTTGAAGTCGATTGTAGGCGTTTT AATCAACGGAGCCAAGGTGGAAGCTAGGCAGCATGCTGCTGCAACTCTTTTTTATCTTGCTTCGATCGAGGAGTATAGACGATTGATCGGCAAAACGACC GATGCTATCTTAGCTTTGATAGAGATGGTCAAGGATTCAACAAGCTACAGGGGACAAAAGAATGCTCTTGCTGCAATCTACGCACTGCTGATGGATACAG GAAACCACTCGAGAGTGGTTGCATCCGGAGCAGTTCCATTGTTGCTCCACGTTGCAAGCTCTTCAGACATCGAAGAGCTAGTAACGGATTCCTTAGCAGT CCTAGGAACCCTGGCAGAGAAACCTGAGGGGGCGAAAGCGATTATTAGATGCGGAGCTTTGCCTCAGGTTGTACAGATTCTAGCCACCACCACTCCAAGT GCTACAAAGGAGCACTGTGTCTGTCTGTTACTTGCTCTGTCCATCAATGGAGGTGAAGATGCTGCAGTAGCTCATCTGGTGCAAAGCCCTTCTCTTATGG GATCATTATACTCCCAGCTCAGCGAAGGCACTTCTCGAGCAAGGAAGAAAGCCAGTGCTCTCATTCGGGTTCTTCACGAATTCCATGAAGGAAGCACGTC CAGTTCGAAGCCGACAGTTCTTCCTCGTGGCCGATTCGTTCATGCGTGGTAA
AA sequence Show only first row Show all	>Lus10030628 pacid=23140568 polypeptide=Lus10030628 locus=Lus10030628.g ID=Lus10030628.BGIv1.0 annot-version=v1.0 MHKTYKGTPPRILPFPAVHPCRSITPETLIASLIGLCRSVTEYRTKQFGSNVRNARETARQIYNLVILLEDIQESCSFIPDSVLVGLSNLHLTVQKVRYL LEDCAREGARMWMLMKSDLVASQFHSLVRRLEILPIKDLDLSDEAIELAELVMRQARNARFEVRADDEVAMGDVSMMLSRFESGGVPDRDEMKRVMDYIG VKKWSDCYREVKFLDSEIEFHFSNPEMKGELELLSRLLGLMNYSRCVFFDSINGKSILPIGEAKARDELLDCLNSDDFLCPISLELMRDPVTIVTGHTYD RCSIVKWFRAGNATCPNTGNKLLSTEFVPNVALKQLIQLYCIENGIQVPELNRKSRDITRTANPGSLVEELAMKAIASFLAGELVHGDVKGKNKAAYEIR LLSKSSIFYRSCLLEAGVIPSLLKLLLSKDGSSQENAIAALLNLSKHSKSKALIFDNGGLKSIVGVLINGAKVEARQHAAATLFYLASIEEYRRLIGKTT DAILALIEMVKDSTSYRGQKNALAAIYALLMDTGNHSRVVASGAVPLLLHVASSSDIEELVTDSLAVLGTLAEKPEGAKAIIRCGALPQVVQILATTTPS ATKEHCVCLLLALSINGGEDAAVAHLVQSPSLMGSLYSQLSEGTSRARKKASALIRVLHEFHEGSTSSSKPTVLPRGRFVHAW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10030628 [exp]	0	1
AT3G49730			Tetratricopeptide repeat (TPR)...		Lus10039021 [exp]	5.9	0.7655
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007658 [exp]	6.0	0.7993
AT4G17150			alpha/beta-Hydrolases superfam...		Lus10039125 [exp]	6.9	0.7776
AT5G35570			O-fucosyltransferase family pr...		Lus10021557 [exp]	7.6	0.7809
AT5G23870			Pectinacetylesterase family pr...		Lus10039238 [exp]	14.4	0.7559
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002777 [exp]	15.6	0.7779
AT4G35320			unknown protein		Lus10013844 [exp]	17.3	0.7490
AT2G25220			Protein kinase superfamily pro...		Lus10005345 [exp]	21.0	0.7628
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018351 [exp]	21.1	0.7696
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10042392 [exp]	24.0	0.7733

Compare expression of checked genes

Lus10030628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.