Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70310 488 / 4e-175 SPDS2 spermidine synthase 2 (.1) AT1G23820 488 / 9e-175 SPDS1 spermidine synthase 1 (.1.2) AT5G53120 385 / 2e-134 SPMS, SPDS3, ATSPDS3 spermidine synthase 3 (.1.2.3.4.5.6) AT5G19530 114 / 3e-29 ACL5 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030861 [exp] 565 / 0 AT1G23820 514 / 0.0 spermidine synthase 1 (.1.2) Lus10029169 [exp] 538 / 0 AT1G23820 562 / 0.0 spermidine synthase 1 (.1.2) Lus10012996 [exp] 525 / 0 AT1G23820 537 / 0.0 spermidine synthase 1 (.1.2) Lus10039416 [exp] 471 / 9e-169 AT1G23820 509 / 0.0 spermidine synthase 1 (.1.2) Lus10019016 [exp] 402 / 8e-141 AT5G53120 571 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Lus10003398 [exp] 395 / 8e-138 AT5G53120 563 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Lus10018259 [exp] 326 / 5e-112 AT1G23820 374 / 6e-130 spermidine synthase 1 (.1.2) Lus10040649 [exp] 132 / 4e-37 AT1G23820 139 / 2e-39 spermidine synthase 1 (.1.2) Lus10000469 [exp] 115 / 1e-29 AT5G19530 407 / 2e-142 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147200 [exp] 504 / 0 AT1G70310 532 / 0.0 spermidine synthase 2 (.1) Potri.010G094600 [exp] 504 / 0 AT1G70310 538 / 0.0 spermidine synthase 2 (.1) Potri.012G002600 [exp] 395 / 2e-138 AT5G53120 582 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.015G018900 [exp] 384 / 1e-133 AT5G53120 545 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.010G089200 [exp] 104 / 2e-25 AT5G19530 447 / 2e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.006G222200 [exp] 102 / 1e-24 AT5G19530 533 / 0.0 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G151800 [exp] 99 / 2e-23 AT5G19530 445 / 7e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01564 [flax] [poplar] Spermine_synth Spermine/spermidine synthase domain
Representative CDS sequence Show only first row Show all	>Lus10030629 pacid=23140631 polypeptide=Lus10030629 locus=Lus10030629.g ID=Lus10030629.BGIv1.0 annot-version=v1.0 ATGGCAACAGAGACCGCCGCCGCCGCTGAGAACGGAACCTCCAATCTGTCCTCCGTCATGCCCGGATGGTTTTCCGAGATTAGCCCCATGTGGCCAGGGG AGGCACATTCTTTGAAGGTGGAGAAGATCTTGTTCCAAGGGAAGTCTGACTACCAGAATGTTATGGTGTTTCAGTCTGCAACGTACGGAAAGGTCCTGGT TTTGGATGGAGTGATTCAGCTCACCGAGAGGGATGAATGTGCTTACCAAGAAATGATCACTCACCTCCCGCTCGCCTCCATACCCAACCCCAAGAAGGTG TTGGTTATCGGTGGAGGTGACGGTGGGGTCTTGAGGGAAGTTGGTCGGTATCCTTCCATCGAGCAGATCGATATCTGCGAGATCGATAAGATGGTTGTTG ATGTTTCTAAAGAGTACTTCCCGAAAGTGGCAGTTGGTTACGAGGATCCCCGTGTTACCCTCCGTATCGGTGATGGAGTGGCATTTTTGAAGGCTGTTCC TGAAGGGACTTATGATGCAGTCATAGTAGATTCCTCTGATCCTATAGGCCCGGCACAAGAGCTGTTTGAGAAGCCCTTCTTCCAATCAGTGGCGAAGGCT CTTCGTCCCGGAGGAGTTGTGTGTACTCAGGCCGAAAGCATTTGGCTTCACATGCACATCATTGAAGATATTGTGTCGAACTGTCGCCAAATCTTCAAAG GCTCCGTCAACTACGCGTGGACCACTGTTCCTACTTATCCCAGTGGTGTGATCGGTTTCATGCTTTGCTCGACCGAGGGGCCGGCTGTTGATTTCAAGAA CCCGGTTGGTTCGATAGACATGGACACTGAATATAACAAAGCTACTGGACCACTGAAATTCTACAACACCGAGCTCCATGGCGCAGCTTTCTGTCTGCCA TCTTTCGCGAAGAAGGTGATCGATGCGAAGTCGAAGTAA
AA sequence Show only first row Show all	>Lus10030629 pacid=23140631 polypeptide=Lus10030629 locus=Lus10030629.g ID=Lus10030629.BGIv1.0 annot-version=v1.0 MATETAAAAENGTSNLSSVMPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLASIPNPKKV LVIGGGDGGVLREVGRYPSIEQIDICEIDKMVVDVSKEYFPKVAVGYEDPRVTLRIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFQSVAKA LRPGGVVCTQAESIWLHMHIIEDIVSNCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPAVDFKNPVGSIDMDTEYNKATGPLKFYNTELHGAAFCLP SFAKKVIDAKSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70310		SPDS2	spermidine synthase 2 (.1)		Lus10030629 [exp]	0	1
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10030861 [exp]	1.0	0.9439
AT5G65490			unknown protein		Lus10002654 [exp]	3.3	0.8696
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10038977 [exp]	4.0	0.9014
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10042951 [exp]	5.5	0.8940
AT4G15490		UGT84A3	UDP-Glycosyltransferase superf...		Lus10019809 [exp]	5.9	0.8951
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10018235 [exp]	6.5	0.9001
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10032188 [exp]	7.7	0.8694
AT5G15780			Pollen Ole e 1 allergen and ex...		Lus10034365 [exp]	8.6	0.8208
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10003557 [exp]	10.0	0.8951
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Lus10033676 [exp]	10.2	0.8350

Compare expression of checked genes

Lus10030629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.