Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 426 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 414 / 6e-132 EFR EF-TU receptor (.1) AT3G47580 413 / 6e-132 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 412 / 2e-131 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 399 / 2e-126 Leucine-rich repeat protein kinase family protein (.1) AT5G39390 345 / 2e-111 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 303 / 6e-91 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 278 / 9e-81 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 254 / 2e-72 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G28650 244 / 2e-69 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030845 [exp] 823 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030846 [exp] 777 / 0 AT3G47570 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 721 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 682 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030847 [exp] 671 / 0 AT3G47570 746 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 671 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 671 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 667 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 662 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007866 [exp] 537 / 8e-180 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G020000 [exp] 507 / 1e-167 AT3G47570 816 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 503 / 1e-166 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 498 / 4e-164 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 494 / 6e-163 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 493 / 2e-162 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 491 / 8e-162 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 489 / 3e-161 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 489 / 3e-161 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G273001 [exp] 478 / 1e-158 AT3G47570 635 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10030630 pacid=23140678 polypeptide=Lus10030630 locus=Lus10030630.g ID=Lus10030630.BGIv1.0 annot-version=v1.0 ATGATCAGTTCTTTTGACATCGGTTTGCTCTCTCCTGTTGATCAGTTCTTCGAGATCGCTTTCCCCTTGAAACTCGCGCAACTCGCTCTCCTCTACATTG TAACATACCACCTCCTCCAGTTCATCAGCATCGCCGCCTCAGTCGACTTAGCCACAAGGCTCTACGACGGGAAGGAGCTTGGCATCAGCAGCCTGACCGA ATCCCTCCGAAAACTTGTCAAGAAATGTCCTCTCATCACGTTCCTGTACAGTGTACTGCTTTCTACTTCCACACTTTTCGGGGGGAACTGTCAAAAACTA TTAATGGTAGACTTTGGTAATAACAATCTTAGTGGCGTAATCCCGCCACAACTCTTGAGCATCACTTCCTTGTCAATATACCTCCGCTTGGCTAAAAATA AATTCAGCGGTTCCATTCCGACGGAGGTGGGAAGGCTAACAAGCTTGGGTTCAATCGACATGTCTCATAATATATTGTCAGGAAACATTCCAAGTAGCAT GGGTAGTTGTCTGAGTCTAGAGTCTTTACAGTTGCAAGGAAATCTCCTACAAGGTGCTATTCCGGAATCATTCAGTTCATTGAGAGGTCTTCAAGCATTG GATCTCTCTTCCAATAACTTAACAGGTCCAGTTCCAAAATTCATGGATCTTATGAATATCTCGCAATCTAATTTGCACTTATCTTATAACAACTTTGACG ATGAAGTGGACGATGATCAAGGATTCTTCATCTCTGTTACTGGGAATAACAAGCTCTGTGGGGGAATGGCTGAACTTAAACTTCCTCCATGTCACTTCTC TAAACAGTCAAAACAGACGTTCAACCTTAAGTGGAAGATTGGAATATCAACAATCTCGGGTGTAGTTTTCCTTGCCCTAATGACTTCTTGCTTGTTTATC CATTGCAAAAGGGGAATACAAGTTTCGGTTTCAGTCAATGATCTCCAACTACCACTGCCTTACCAATGGCTATACAAGGCTACAAACGGATTTTCATCAA CGAATCTGATTGGTGTGGGTAGCTTTGGCTCTGTGTACAAGGGAGTACTTATTAACGAGAATGGTACCGAGACCAATATTGCTGTCAAGGTATTCAATCT TGAGCGTTATGGCGCTTTTAAAAGTTTTAAGGCAGAATGTGAAGCGTTAAAGAATATCAAACACAGAAACCTTATGAGGATAATCACAGTGTGCTCAAGT GTTGATCATTCAGGGAAGGATTTCAAGGCTCTCATCTATGAGTTCTTGGCTAATGGAAGCTTGGAAGAGTGGCTCCATCACTCAATCGAAAGAGTAAGAG AGCCTACAAGAAGCTTAATTTTCAACGAGAGGGTCAATCTAGCAATTGATATAGCTTATGGAGTGGATTATCTTCACAATAATTGTGGAACTACTATTGT TCATTGTGATCTCAAGCCGAGCAACATACTGCTTGATGAAGATATGGTGGCTCATATTGGTGATTTTGGATTGGCAAGAATCCTTTCCGAACATGCGGAT CCCTCTTCAAACTCTATTTTCATAAAGGGAACAGTTGGTTACGCAGCTCCAGAATATGGAATGGGGAATAAAGTTTCATTACAAGGTGATGTGTATAGTT ATGGTATCCTGTTGCTTGAGATGTTTACTGGACGGAGACCAGTAGATGAAACTTTTGAAGAAGACTTCAATCTTCATAACATTATCCAAAGCGCTTTGTC AAAACAACAAACAATGGAAGTTGTGGATCCTATTCTACTCGGTAGGCCGACAACGCATTGTAGGCAACCTAGTAGCAGGAAAGAGGAAACAATAAAACGT CTAGAGGAATTACTGACTTCCATTCTTGAAATTGGTATCACATGTTCTTCCGACAACCCAGAAAAGCGAGTTAGTATGAGCGAAGTTTTGTCAAAACTTA CCACTATAAAAAAACAAGCTGAAGGAGGTGATTGGCGAAACTGCTTCTGCGGGTTCGAGTCCAATGCTCTTATATCAGTTGAATAG
AA sequence Show only first row Show all	>Lus10030630 pacid=23140678 polypeptide=Lus10030630 locus=Lus10030630.g ID=Lus10030630.BGIv1.0 annot-version=v1.0 MISSFDIGLLSPVDQFFEIAFPLKLAQLALLYIVTYHLLQFISIAASVDLATRLYDGKELGISSLTESLRKLVKKCPLITFLYSVLLSTSTLFGGNCQKL LMVDFGNNNLSGVIPPQLLSITSLSIYLRLAKNKFSGSIPTEVGRLTSLGSIDMSHNILSGNIPSSMGSCLSLESLQLQGNLLQGAIPESFSSLRGLQAL DLSSNNLTGPVPKFMDLMNISQSNLHLSYNNFDDEVDDDQGFFISVTGNNKLCGGMAELKLPPCHFSKQSKQTFNLKWKIGISTISGVVFLALMTSCLFI HCKRGIQVSVSVNDLQLPLPYQWLYKATNGFSSTNLIGVGSFGSVYKGVLINENGTETNIAVKVFNLERYGAFKSFKAECEALKNIKHRNLMRIITVCSS VDHSGKDFKALIYEFLANGSLEEWLHHSIERVREPTRSLIFNERVNLAIDIAYGVDYLHNNCGTTIVHCDLKPSNILLDEDMVAHIGDFGLARILSEHAD PSSNSIFIKGTVGYAAPEYGMGNKVSLQGDVYSYGILLLEMFTGRRPVDETFEEDFNLHNIIQSALSKQQTMEVVDPILLGRPTTHCRQPSSRKEETIKR LEELLTSILEIGITCSSDNPEKRVSMSEVLSKLTTIKKQAEGGDWRNCFCGFESNALISVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10030630 [exp]	0	1
AT5G39020			Malectin/receptor-like protein...		Lus10025544 [exp]	2.8	0.9120
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10019944 [exp]	3.5	0.8931
AT4G21960		PRXR1	Peroxidase superfamily protein...		Lus10020045 [exp]	4.0	0.8900
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10015258 [exp]	4.9	0.8980
AT1G77290			Glutathione S-transferase fami...		Lus10029723 [exp]	7.3	0.8849
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	9.1	0.9048
AT3G24770		CLE41	CLAVATA3/ESR-RELATED 41 (.1)		Lus10011868 [exp]	9.3	0.8985
AT4G02405			S-adenosyl-L-methionine-depend...		Lus10015003 [exp]	9.5	0.8944
AT2G19770		PRF5	profilin 5 (.1)		Lus10037591 [exp]	9.5	0.8741
AT1G55110	C2H2ZnF	ARABIDOPSISTHAL...	indeterminate(ID)-domain 7 (.1...		Lus10029904 [exp]	12.2	0.8871

Compare expression of checked genes

Lus10030630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.