Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 169 / 4e-47 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 168 / 9e-47 EFR EF-TU receptor (.1) AT3G11080 157 / 6e-43 AtRLP35 receptor like protein 35 (.1) AT3G47110 150 / 1e-40 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 150 / 1e-40 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 147 / 2e-39 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G41820 146 / 4e-39 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 142 / 1e-37 Leucine-rich repeat protein kinase family protein (.1) AT1G71400 142 / 1e-37 AtRLP12 receptor like protein 12 (.1) AT2G25790 142 / 1e-37 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030855 [exp] 382 / 1e-125 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 372 / 2e-121 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 330 / 1e-105 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 315 / 7e-100 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014500 [exp] 311 / 7e-99 AT3G47570 663 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 311 / 3e-98 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 306 / 2e-96 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030854 [exp] 304 / 4e-96 AT3G47110 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 301 / 2e-94 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G115900 [exp] 231 / 9e-69 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 228 / 7e-68 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 228 / 1e-67 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 223 / 4e-66 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 215 / 3e-63 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033900 [exp] 214 / 5e-63 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 214 / 8e-63 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 214 / 1e-62 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 214 / 1e-62 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 213 / 2e-62 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030633 pacid=23140679 polypeptide=Lus10030633 locus=Lus10030633.g ID=Lus10030633.BGIv1.0 annot-version=v1.0 ATGGGTTCAGGAGATCGCGTGGCTTTACTACATTTCAAGTCCACAATCTCTGCCGATCCTACGAAGGTTCTGAGCTCGTGGAACGAGTCGACCCACTTCT GTCAGTGGTATGGCGTGACTTGTTCCAAAAAGACATTATGGCAGAGTAATTGCTTTACAGTTGCCATCTCAAGCACTCTCTGGCTCTATCTCACCACACA TCGGCAACCTCAGCTTTTGAAGGTGTTGAGTCTCTACAACAACAGCTTCATCGGTGGAATCCCTCTTGAAATCGGCTGCCTTCACAGATTGCAACAGTTG CTGCTTTCTAACAACTCGTTTGGCGGCAGGATCCCATCCAACATCTCAGGTTTATCTGCTCTAACAACATTCGATATGTCTAGAAATAAGTTAGTGGGAC GCCTACCGTGGCAGTTTCACTTATTGAAAAAGCTCGAATGTTTGGATATAAGCTTCAACAGTCTAACAGGAAGCATCCCTCACTCTTTTAGTAACTTGTC ATCTCTTGAGGTGTTCAGTGCAGCTCACAACCGATTCAGTGGGAGAATTCCTGATGCTTTAGGCGATCTAACGAGTTTTTACTTTATAGCTCTGAATTCC AACGACCTGCATGGAGAAATTCCTGCTTCCATTTTCAATCTATCTACTCTCACACAATTGTGGTTTGGACATAACCGACTCGATGGAACTCTTCCTTGGA ACGTTGGAATATCACTTCCGAAGCTCGAGTATTTATGTGTGAATAGCAATCAGTTTACTGGTAGTGTTCCTTCTTCCTTATCCAATGCATCCAATCTGGT TATGTTACAACTCCTACGAAACAACTTTACAGGGAGCATGCCGGGTATGGCAAGCTCTAACAAGCTTTTGCGCCTTTTGATCCACGACAACTTTCTGGAA GTGGTGGCCGGGAAGCTGATGACTTGA
AA sequence Show only first row Show all	>Lus10030633 pacid=23140679 polypeptide=Lus10030633 locus=Lus10030633.g ID=Lus10030633.BGIv1.0 annot-version=v1.0 MGSGDRVALLHFKSTISADPTKVLSSWNESTHFCQWYGVTCSKKTLWQSNCFTVAISSTLWLYLTTHRQPQLLKVLSLYNNSFIGGIPLEIGCLHRLQQL LLSNNSFGGRIPSNISGLSALTTFDMSRNKLVGRLPWQFHLLKKLECLDISFNSLTGSIPHSFSNLSSLEVFSAAHNRFSGRIPDALGDLTSFYFIALNS NDLHGEIPASIFNLSTLTQLWFGHNRLDGTLPWNVGISLPKLEYLCVNSNQFTGSVPSSLSNASNLVMLQLLRNNFTGSMPGMASSNKLLRLLIHDNFLE VVAGKLMT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10030633 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	3.3	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	4.7	1.0000
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	5.7	1.0000
					Lus10024141 [exp]	6.6	1.0000
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	7.4	1.0000
					Lus10013255 [exp]	8.1	1.0000
					Lus10013259 [exp]	8.8	1.0000
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10013964 [exp]	9.4	1.0000
AT3G06240			F-box family protein (.1)		Lus10014136 [exp]	9.9	1.0000
					Lus10028570 [exp]	10.5	1.0000

Compare expression of checked genes

Lus10030633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.