Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 698 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 635 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 634 / 0 EFR EF-TU receptor (.1) AT3G47580 628 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 602 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 396 / 3e-121 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 387 / 3e-116 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 370 / 1e-110 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 367 / 5e-110 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G33170 368 / 1e-109 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030854 [exp] 1340 / 0 AT3G47110 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 1206 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 1176 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 1149 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 1145 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 1145 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 1124 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 1113 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 1097 / 0 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007866 [exp] 861 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 859 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 842 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 840 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 835 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 809 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 806 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 795 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 782 / 0 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 782 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030634 pacid=23140780 polypeptide=Lus10030634 locus=Lus10030634.g ID=Lus10030634.BGIv1.0 annot-version=v1.0 ATGAATGAGCCTGCTAAACTCTTGAACTTCATTCAAAGGATAAATATATCAATAGATGTAGCTTCTGCTATGGACTATCTTCACAACCATTGTGAGAACC CTATTGTCCATTGCGATCTCAAGCCTAGTAACGTACTTCTAGACGAGGATATGGTCGCTCACGTGGGAGATTTTGGGTTGGCGAGATTTATTTTGGAAAT TGCAAATCCAGCTTCAAGTTCTATTGGCATAAAGGGAACGGTCAGTTATACACCACCAGCACTTGTTCGGCTGTTGTTGTTCTATTGTTGTTTGTGTGCT TCCTCCTCATTCGGGACTTTGTTGAGTAACGAGACAGACCGTGTGGCTTTGCTACAATTCAAGTCCATGATTTCTGTCGATCATCTGGGGGCTCTGAGAT CTTGGAATGACTCTACTCATTTTTGTGAGTGGTATGGCGTCTTTTGTTCCAAAAAACATTATGGCCGAGTCACTGCCTTACGCCTGCAATCTCAAGGGCT GGCTGGCTCTATCTCACCGCACATTGGCAATCTTAGCTTCCTCAATTTGTTGGGTCTACACAACAACAGTTTCACCGGTGGAATCCCTCCGGAAATAGGC CGTCTTCGCAGATTGCGACATCTAGGACTTTTCAACAATTCACTCGGCGGTGAGATCCCATCAAACATCTCTCAATGCTCTGCTCTTCTTACAATGGACC TATCTGTTAACAAGCTAGTGGGACGATTAGCATGGAAGTTTGGCCGATTGCACAAACTCCAAACCTTTAACGTGCACTCGAACAATCTAAGAGGCACCAT CCCTTTGTCTTTGGGAAACTTGTCGTCATCTCTTCGAGCATTCGTTGTAATGGAGAACGAATTGAGTGGGAGAATTCCTGATACTCTAGGACAATTGAAG AATCTTCGATTTCTATCCTTCAGTTCGAATAAATTATCCGGCGAAATCCCTGCTTCCATTTTTAATCTTTCTTCTTTGACTGACCTATGGTTTGGAACGA ACCAACTCCATGGAAATCTTCCTTGGAATTTGGGAATATCGCTTCCAAACCTGCAACGCTTCGACGTGGCTGATAACCACTTTACTGGTAGTCTTCCACC TTCATTATCCAATGCATCCAATTTGGTTATGCTCCAACTCTTAGATAACAATTTTACAGGAAGTGTGCCTAATATGGCAAGCTCCCACAAGCTCACGCGT TTTTCGATCCATGGAAACAATCTGGGAAGTGGCAATGCAACAGATCTCAGCTTCTTCTCTTCTTTGACCAATGCCACAGGTTTGGAATTCCTAGTTATGG GCGAGAATAATTTTGGAGGTAGCTTACCGCAATATTTTGGCAATTTGTCAACTAACCTGAAAGCTTTAGTCTTTGACCAAAACCAAATATCAGGAAACAT TCCAAACGAGATACAAAATCTTGTCAACTTGGAAGCGATATGGGCATTCAACAACAAATTGTCAGGTACAATCCCATCAAGCATCGGAAGCCTACACTCT TTACAACTATTGTATTTGTTCAACAACAATTTTTCAGGATATATTCCTCCCTCTATTGGAAACTTGACGAAATTAATTAAGCTCGATATAAGCGGTAACC ATCTGCATGGAGAAATTCCTGCTTCCGTTCAGAATTGTCAGAGGTTATTAGATTTGCGACTCTCTAGCAACAATCTTAGTGGTCTCATCCCTCCTCAAGT CATTGGTATTGCTTCATTGTCAATTAAATTGGACTTGTCCAATAACCAGTTCACCGGTTCGATTCCCACGGAGGTGGGAACTCTGAGAAACTTGGAAGCA TTGAGTATATCTCATAACATGCTGACAGGCAACATTCCAAGTAGTCTAGGTAGTTGTATCAACCTACAGTCTTTGTCCTTACGAGGAAATCTCCTACAGG GTATAATTCCTTCATCTTTGAGTTCATTGAAGGGTATTCAACAACTGGATCTATCTGCCAATAACTTATCTGGTCAAATACCAAAATTCTTGGAGGTCAT GAATATCTCACACTTTTTAAATCTATCATTCAACAATTTCGAAGGTGAAGTTCCAAGCGGAGGAGTTTTCAAGAATGCCAGCATCATTTCAGTCGAAGGA AACATCAAGATTTGCGGGGGAATCACTGAACTTAAGCTTCCACCTTGCAATGATAACTTCGGACACTCGAAAAAAGGGTTGAGTCGTAAGTGGAAGATTA TTATATCAACCGTCTCGAGTATACTCTTTCTTACCTTCCTGGCTTCTTACTTGTTCGTATTTTGGATAAAAAATAGAAAACAAGATATGGTGGCGACTGA TGAGAATCAACAGTTATTACAACTATCTTACCAACAACTTTATAGAGCTACAAATGGCTTCTCCTCGGTAAATCTGATAGGCGCTGGGAGCTTTGGCTCC GTGTTCAAGGGAGTAATTCACAAGGGCGGAACCATTACTAATATTGCGGTGAAAGTATTCAATCTTCAATACCGTGGAGCTTTCAAGAGTTTTATGGCAG AGTGTGAAGCGTTGAAGAACGTTAGACATAGAAATCTTGCGAGGATAGTTACGGTGTGTTCAAGTGTTGATCATCAAGGGAATGAATTCAAAGCCCTCAT CTATGAGTTTTTTGTCAATGGAAGCTTGGAGGACTGGCTGCATCACCAAATTGAAAGAATAGATGTGTCTACGAGGGGCTTGAATTTCATTGAGAGGGTG AACATTGCCATTGATATAGCTTCCGCAATGGAGTATCTTCACAGTCAATGTGTAACTCCTATTGTTCATTGTGATCTCAAGCCTAACAACGTACTTCTAG ATGAGGCTATGATCGCTCACGTAGAATATGGAATGGAAAATCAAGTCTCAATACAAGGGGATGTATACAGTTATGGTATTCTCTTACTTGAATTATTTAC CGGAAAGAGGCCTATTGATGAGATTTTCACTCAAGGATTGGACCTTCATAATATGGTCACAAATGCTTTGTCAAATCAAGAGATTATGGAAGTTGTGGAT CCAACTCTCCTCAATGAACTACTTCATCAAAGGCCGCGAATCTATCGCAATCACAACGAGGAAACGAGAAAGGGCCCCGGTGAGCTACTGAGTTCCATTC TTAAAATTGGCGTCGCTTGTTCTTCGGACATTCCAAAAAACAGAGTTTGCATGAGCGAGGTTGTATCAAGACTTACCGGCATCCGATTGAGTGTTCTGTC TGGCTAA
AA sequence Show only first row Show all	>Lus10030634 pacid=23140780 polypeptide=Lus10030634 locus=Lus10030634.g ID=Lus10030634.BGIv1.0 annot-version=v1.0 MNEPAKLLNFIQRINISIDVASAMDYLHNHCENPIVHCDLKPSNVLLDEDMVAHVGDFGLARFILEIANPASSSIGIKGTVSYTPPALVRLLLFYCCLCA SSSFGTLLSNETDRVALLQFKSMISVDHLGALRSWNDSTHFCEWYGVFCSKKHYGRVTALRLQSQGLAGSISPHIGNLSFLNLLGLHNNSFTGGIPPEIG RLRRLRHLGLFNNSLGGEIPSNISQCSALLTMDLSVNKLVGRLAWKFGRLHKLQTFNVHSNNLRGTIPLSLGNLSSSLRAFVVMENELSGRIPDTLGQLK NLRFLSFSSNKLSGEIPASIFNLSSLTDLWFGTNQLHGNLPWNLGISLPNLQRFDVADNHFTGSLPPSLSNASNLVMLQLLDNNFTGSVPNMASSHKLTR FSIHGNNLGSGNATDLSFFSSLTNATGLEFLVMGENNFGGSLPQYFGNLSTNLKALVFDQNQISGNIPNEIQNLVNLEAIWAFNNKLSGTIPSSIGSLHS LQLLYLFNNNFSGYIPPSIGNLTKLIKLDISGNHLHGEIPASVQNCQRLLDLRLSSNNLSGLIPPQVIGIASLSIKLDLSNNQFTGSIPTEVGTLRNLEA LSISHNMLTGNIPSSLGSCINLQSLSLRGNLLQGIIPSSLSSLKGIQQLDLSANNLSGQIPKFLEVMNISHFLNLSFNNFEGEVPSGGVFKNASIISVEG NIKICGGITELKLPPCNDNFGHSKKGLSRKWKIIISTVSSILFLTFLASYLFVFWIKNRKQDMVATDENQQLLQLSYQQLYRATNGFSSVNLIGAGSFGS VFKGVIHKGGTITNIAVKVFNLQYRGAFKSFMAECEALKNVRHRNLARIVTVCSSVDHQGNEFKALIYEFFVNGSLEDWLHHQIERIDVSTRGLNFIERV NIAIDIASAMEYLHSQCVTPIVHCDLKPNNVLLDEAMIAHVEYGMENQVSIQGDVYSYGILLLELFTGKRPIDEIFTQGLDLHNMVTNALSNQEIMEVVD PTLLNELLHQRPRIYRNHNEETRKGPGELLSSILKIGVACSSDIPKNRVCMSEVVSRLTGIRLSVLSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10030634 [exp]	0	1
					Lus10029558 [exp]	7.9	0.9248
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027322 [exp]	9.1	0.7892
AT3G03550			RING/U-box superfamily protein...		Lus10009264 [exp]	10.5	0.7320
					Lus10002313 [exp]	11.2	0.9248
AT1G16260			Wall-associated kinase family ...		Lus10009751 [exp]	12.5	0.8180
AT5G24070			Peroxidase superfamily protein...		Lus10027049 [exp]	13.7	0.9248
AT1G61440			S-locus lectin protein kinase ...		Lus10038413 [exp]	14.2	0.8444
					Lus10027530 [exp]	15.9	0.9248
AT1G11330			S-locus lectin protein kinase ...		Lus10038411 [exp]	17.6	0.7488
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	17.7	0.9248

Compare expression of checked genes

Lus10030634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.