Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 757 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 689 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 678 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 666 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 665 / 0 EFR EF-TU receptor (.1) AT5G46330 453 / 5e-142 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G24130 427 / 6e-134 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 421 / 2e-130 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G65700 416 / 9e-130 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G24240 419 / 3e-129 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030851 [exp] 1466 / 0 AT3G47570 748 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030847 [exp] 1190 / 0 AT3G47570 746 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 1171 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 1165 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 1158 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 1145 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 1129 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 1126 / 0 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 1124 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007866 [exp] 911 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 905 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 881 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 872 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 865 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 863 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 855 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 847 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 845 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 842 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030636 pacid=23140716 polypeptide=Lus10030636 locus=Lus10030636.g ID=Lus10030636.BGIv1.0 annot-version=v1.0 ATGGCTTTGCTACACTTCAAGTCCATGATCACGGACGATCCTTTCGGGGCTCTGAATTCGTGGAACGATTCGACCCACTTGTGTAAGTGGTATGGCGTGA CTTGTTCCGATGGGAGAGTCGCTAACTTAACTCTCCCGTCTCAAAGACTCTCTGGCTCTATCTCGCCTCACATCGGCAACCTCAGCTTCCTGAAGGGTTT GCATCTCTATAACAACAGCTTTGTCCGCGAGATCCCTTCCGAAATCGGAAGACTTCGCATGCTGCAAATGTTGGAGCTTCACAACAACACGCTCGGCGGT GAGATCCCATCCAATATCTCGGAATGCTCGGAGCTGACGGTGATACATCTGCAGGACAACAACCTCCAAGGACCACTACCATGGCAGTTTGGTCAGTTGC AAAAGCTCGAAATTTTGTTTATCTATACAAACAATCTAACAGGTCCCATCCCTCCCTCAATCGGCAACTTGTCGTCTCTTCAATTGTTCGCGCCAGTCCA GAACAGCTTCAGTGGCACGATTCCCGAGTCTCTAGGACGGTTGAAGAGCCTCACCGCTCTGTATCTGAACATCAACGACTTATCCGGTGAAATCCCCGCT TCCATTTTCAATCTTTCTTCCCTCACGGATCTGTGGTTCGGAGGGAACTACAAACTCCATGGTGAACTTCCTCCCGACCTAGGGATACTACTTCCAAATC TCGTGAACTTCGACGTGGGTGGTAATCGATTCATCGGTCGTGTCCCGCCTTCCATATCCAATATCTCCAACTTGTTTATGCTGCAAATGTCAGAAAACAA CTTCACAGGGAGCATGCCCAGCTTGGCAGCCTGCCCTAAGTTCGCGCGCCTTCTCGTCCAGAGTAACTCTCTAGGAACCGGGAAAGCTTCCGATTTGGAC TTCCTGGCATCTTTGGTGAATGCATCAGGTTTGGAAGTGGTGCATATTGAGAAGAACAATTTCGGAGGAATCATACCGGAAAATATTGGCAACTGGTCGA CCAACCTCTTGCAGTTAACCCTTAACGACAACAAAATATCAGGAAACTTTCCAAATGGGATACAATCACTTGTCAACTTGGAGGTGCTTTGGGCAAACGA CAATTACCTGACAGGTACGATCCAATCTAGCTTCGGAAACTTGCGGTATCTCCGACGGTGTAATTTGTTCAACAACAGAATTTCGGGGACTATTCCGATG TCTATTGGAAACCTGACGGAATTGATTGAGCTGGATATTAGCGCTAACCGTCTGCAGGGAGAGATTCCTGCTTCTATTGGGAATTTGGAGAATTTGTTGT TGTTTAACCTTTCTTACAATGATTTACATGGTGTCATCCCTCTGCAAGTTATGGGTCTGACTTCCTTGTCCCGGGGCCTTGACTTGTCGTATAATCGATT CACCGGTCCGATTCCCTCCGAGGTGGGAAATTTGAGGAATTTGGGTTCGTTGGTTCTGTCTCACAACATGTTGTCTGGTATGATTCCTAGTAGTTTGGGC AGTTGCGTTATGTTGGAGACTCTGAATTTGGGAGGGAATCTCCTACAGGGTTCTATTCCGTCTTCTTTGAGTTCTATTCGAGGTATTGAGAAGTTGGATC TTTCTGGCAACAACTTATCGGGTCGGATACCAATTTTCTTGGAGCGCATGAATATCTCCAAGTTCTTGAATTTGTCATATAACAATTTCGATGGTGAGAT GCTTGCAGAAGGAGTCTTTCGAAATGTCACCATTGTTTCAGTTGTCGGAAATAACAAGCTATGTGGGGGAATGACCGAGTTCAAACTTCCACCATGTAAG AACTTGGTACACAAGTCACTGAGCAGAAAACAAGGTGTTGATTCAGTTGATGATATGCAATTACAACAATTGTCTTACCAAATGCTCCACAAGGCAACCG ATGGCTTCTCGTCAGCAAACCTAATTGGTGTAGGCAGCTTTGGCTCCGTATATAAGGGAGACCTTGAGGAGAATGATTTGACTACCAATATTGCCGTGAA GGTATTCAACCTTCAACGCCGGGGAGCTTCCAAGAGTTTTATAGCAGAATGTGAAGCTCTCAAGAATATCAAACACATAAATCTTGTCAAGATATTGACT GTGTGTTCAAGTGTTGATTATAAAGGAGATGATTTCAAGGCTCTCATTTATGAGTTTTTGGCTAATGGAAGCTTGGAAGATTGGTTGCATCCTCCAGTTG AAAGAACGGACGAGCCTATAAAGAGCTTGAATTTCCTTCAAAAAATAAATCTTGTCATTGATATAGCTTCTGCAATTGATTATCTTCACAACAATTGCGG AACTCCAATTGTTCATTGTGATATCAAACCTAGCAATATATTGCTTGATGAGAATATGAGGGGTCACGTAGGTGATTTTGGGTTGGCAAGATTCATTTCC GCCGTTCCAAATCCCTCAATGAGTTCCATTGGTATTAAAGGAACAGTTGGCTATGCACCTCCAGAATATGGAACGGGAAACGAAGTGTCAATACAAGGTG ACGTATACAGTTTTGGTGTCCTCTTACTCGAGATGTTTACCGGAAGAAGGCCAATTGACGAGATTTTCACAGAAGGCTCAAACCTTCATAACAATGTTAG AAGTGCATTATCGAATCAACAGACAATGATGGAAGTTGTGGATCCATTTCTACTCAACGAACTACGTAGTAGGCTGACAGCCCTTCACAATCATACTAGT GGTAGTAGCTTGGAGGAAACAAGAAATGGATTAGAAGAGGTAATGAGTTCTATTCTCGAAATTGGCGTTACTTGTTCCGCAAACATCCCAGAAGAGCGTG GTAGTATGGCTGATGTCTTGTCAAGACTTACTGCTATGAAGAAAAAGCTTGGTCAGTTGAATCCTATTGAAAGGGCGTGA
AA sequence Show only first row Show all	>Lus10030636 pacid=23140716 polypeptide=Lus10030636 locus=Lus10030636.g ID=Lus10030636.BGIv1.0 annot-version=v1.0 MALLHFKSMITDDPFGALNSWNDSTHLCKWYGVTCSDGRVANLTLPSQRLSGSISPHIGNLSFLKGLHLYNNSFVREIPSEIGRLRMLQMLELHNNTLGG EIPSNISECSELTVIHLQDNNLQGPLPWQFGQLQKLEILFIYTNNLTGPIPPSIGNLSSLQLFAPVQNSFSGTIPESLGRLKSLTALYLNINDLSGEIPA SIFNLSSLTDLWFGGNYKLHGELPPDLGILLPNLVNFDVGGNRFIGRVPPSISNISNLFMLQMSENNFTGSMPSLAACPKFARLLVQSNSLGTGKASDLD FLASLVNASGLEVVHIEKNNFGGIIPENIGNWSTNLLQLTLNDNKISGNFPNGIQSLVNLEVLWANDNYLTGTIQSSFGNLRYLRRCNLFNNRISGTIPM SIGNLTELIELDISANRLQGEIPASIGNLENLLLFNLSYNDLHGVIPLQVMGLTSLSRGLDLSYNRFTGPIPSEVGNLRNLGSLVLSHNMLSGMIPSSLG SCVMLETLNLGGNLLQGSIPSSLSSIRGIEKLDLSGNNLSGRIPIFLERMNISKFLNLSYNNFDGEMLAEGVFRNVTIVSVVGNNKLCGGMTEFKLPPCK NLVHKSLSRKQGVDSVDDMQLQQLSYQMLHKATDGFSSANLIGVGSFGSVYKGDLEENDLTTNIAVKVFNLQRRGASKSFIAECEALKNIKHINLVKILT VCSSVDYKGDDFKALIYEFLANGSLEDWLHPPVERTDEPIKSLNFLQKINLVIDIASAIDYLHNNCGTPIVHCDIKPSNILLDENMRGHVGDFGLARFIS AVPNPSMSSIGIKGTVGYAPPEYGTGNEVSIQGDVYSFGVLLLEMFTGRRPIDEIFTEGSNLHNNVRSALSNQQTMMEVVDPFLLNELRSRLTALHNHTS GSSLEETRNGLEEVMSSILEIGVTCSANIPEERGSMADVLSRLTAMKKKLGQLNPIERA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10030636 [exp]	0	1
AT3G57440			unknown protein		Lus10042062 [exp]	5.7	0.9593
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	9.7	0.9547
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	12.1	0.9501
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	14.0	0.9501
					Lus10005830 [exp]	15.7	0.9501
					Lus10009618 [exp]	17.1	0.9501
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10013556 [exp]	18.5	0.9501
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10039085 [exp]	19.8	0.9501
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024077 [exp]	21.0	0.9501
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10028844 [exp]	22.1	0.9496

Compare expression of checked genes

Lus10030636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.