Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70280 216 / 3e-65 NHL domain-containing protein (.1.2) AT1G23880 209 / 3e-62 NHL domain-containing protein (.1) AT5G14890 129 / 2e-32 NHL domain-containing protein (.1) AT3G14860 104 / 2e-24 NHL domain-containing protein (.1.2) AT1G23890 64 / 3e-11 NHL domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030850 [exp] 387 / 1e-130 AT1G23880 464 / 2e-158 NHL domain-containing protein (.1) Lus10029176 [exp] 201 / 3e-59 AT1G70280 540 / 0.0 NHL domain-containing protein (.1.2) Lus10014529 [exp] 173 / 2e-49 AT5G14890 355 / 8e-115 NHL domain-containing protein (.1) Lus10012989 [exp] 172 / 8e-49 AT1G70280 538 / 0.0 NHL domain-containing protein (.1.2) Lus10039484 [exp] 149 / 5e-40 AT1G70280 423 / 1e-143 NHL domain-containing protein (.1.2) Lus10032158 [exp] 147 / 9e-40 AT1G70280 342 / 2e-113 NHL domain-containing protein (.1.2) Lus10039421 [exp] 120 / 2e-31 AT1G23880 329 / 1e-110 NHL domain-containing protein (.1) Lus10030639 [exp] 74 / 2e-14 AT1G23890 191 / 2e-57 NHL domain-containing protein (.1.2) Lus10030849 [exp] 64 / 4e-11 AT1G23890 271 / 7e-88 NHL domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G094200 [exp] 208 / 1e-62 AT1G70280 511 / 5e-179 NHL domain-containing protein (.1.2) Potri.008G147700 [exp] 202 / 4e-60 AT1G70280 568 / 0.0 NHL domain-containing protein (.1.2) Potri.016G092200 [exp] 143 / 5e-38 AT1G70280 465 / 3e-160 NHL domain-containing protein (.1.2) Potri.001G387500 [exp] 109 / 8e-26 AT3G14860 534 / 0.0 NHL domain-containing protein (.1.2) Potri.011G107800 [exp] 102 / 9e-24 AT3G14860 553 / 0.0 NHL domain-containing protein (.1.2) Potri.008G122450 [exp] 51 / 2e-08 AT1G23880 49 / 3e-08 NHL domain-containing protein (.1) Potri.017G129500 [exp] 50 / 1e-06 AT1G23890 247 / 3e-78 NHL domain-containing protein (.1.2) Potri.009G072933 [exp] 46 / 1e-06 AT1G23880 44 / 7e-07 NHL domain-containing protein (.1) Potri.004G087300 [exp] 50 / 2e-06 AT1G23890 261 / 9e-84 NHL domain-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030637 pacid=23140766 polypeptide=Lus10030637 locus=Lus10030637.g ID=Lus10030637.BGIv1.0 annot-version=v1.0 ATGGCTGTAATGGTGAAGTATGCGTTTCTCTTCAGCGTCACATTCATCCTCCTCTTTGCTTCCAATGGCGTCTCCTCCGCTCCTCTAGTCTCCCCTGCAA GGATCGTCAGCGGAATTTTCTCGAACACCTTGCCTGCATTCATGAAATGGGTCTGGTCGCTCAAGGCCTCCACCAAGACAGTAATGTCTGGTCGTCCATT GATGAAATTCGAGCCCGGTTACACTGTGGAGACGATGTTTGATGGAAGCAAAGCTGGAATTGATCCTTACTCTGTTGAAGTTTTGTCCAGTGGGGAGCTT CTGGTTTTGGACTCTGCTAATAGCAATCTTTACAAGATTCCTTCTTCTCTGTCTCTATGGGTTACAACCATTGCTGGAGGAAAACGAGGAAACGGAGGTG GCCATGTAGATGGAGCAAGCGAAGATGCGAAATTTTCGAACGATTTCGATGTGGTCTACATGGGAAGCAGCTGTTCTCTCCTTGTGATAGACAGAGGAAA CAAAGCTATTAGAGAGATCCAGCTCCACTTTGATGACTGTGCTTACCAGTATGAAAGTGGCTTCCCTTTTGATTGGTACAACTACTCCATTCGATACGAT TGTTTTGCAACAGAGATCGCGCTTCTTCTAGCGGCTGGCTTTGTTGGTTACATGCTGGCTTTCCTCCAACGTAGGATGGGAGCAATGGTTTCTTCACATA GCCATCAGAGATCATACTCAGCTGGCTGGCCAATTCAAGACAGCTACGTTATACCAGAGGACGACGAGCCTCCCACTGTCGAAGCGAGAACCCCTACCCC GAGGAAGAAGAAAACGTACGCTTTCATGTCGAAAGATGCTGATAATAAGATGCAAAGGTGGCGCCAAGGTCGCGATAGGGAGACGCCACATCAGCAGCAG CAGCAGGCGAATCAGCAGCATCCACGCCAGCAGCATCAATCCAGCACCCCTGTGGCTCCTTACACTTACTATGAACAGAGCCATGAGGACACCAATGAGA TAGTGTTCGGAGCAGTTCAAGAAATCAATGGTGCTAAGCTGAAACCGTCGGTGATTAAGCCTGTTGATTATGGAGATCCGATGTTCGACCGGTATAATAT TCGAGTTCGTTCCAGTTCTGCTCGTTATGGTAATGCTTGA
AA sequence Show only first row Show all	>Lus10030637 pacid=23140766 polypeptide=Lus10030637 locus=Lus10030637.g ID=Lus10030637.BGIv1.0 annot-version=v1.0 MAVMVKYAFLFSVTFILLFASNGVSSAPLVSPARIVSGIFSNTLPAFMKWVWSLKASTKTVMSGRPLMKFEPGYTVETMFDGSKAGIDPYSVEVLSSGEL LVLDSANSNLYKIPSSLSLWVTTIAGGKRGNGGGHVDGASEDAKFSNDFDVVYMGSSCSLLVIDRGNKAIREIQLHFDDCAYQYESGFPFDWYNYSIRYD CFATEIALLLAAGFVGYMLAFLQRRMGAMVSSHSHQRSYSAGWPIQDSYVIPEDDEPPTVEARTPTPRKKKTYAFMSKDADNKMQRWRQGRDRETPHQQQ QQANQQHPRQQHQSSTPVAPYTYYEQSHEDTNEIVFGAVQEINGAKLKPSVIKPVDYGDPMFDRYNIRVRSSSARYGNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70280			NHL domain-containing protein ...		Lus10030637 [exp]	0	1
AT1G23880			NHL domain-containing protein ...		Lus10030850 [exp]	1.0	0.9128
AT3G11945		PDS2, ATHST	PHYTOENE DESATURATION 2, homog...		Lus10029321 [exp]	6.3	0.7954
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002940 [exp]	6.9	0.8468
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10030703 [exp]	8.1	0.8190
AT2G15620		ATHNIR, NIR1	ARABIDOPSIS THALIANA NITRITE R...		Lus10014059 [exp]	8.7	0.7802
AT1G64650			Major facilitator superfamily ...		Lus10017322 [exp]	8.8	0.8432
AT3G01810			unknown protein		Lus10022341 [exp]	8.9	0.8330
AT4G23900			Nucleoside diphosphate kinase ...		Lus10003878 [exp]	13.9	0.7911
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	14.0	0.7876
AT2G41150			unknown protein		Lus10008860 [exp]	16.9	0.7923

Compare expression of checked genes

Lus10030637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.