Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 747 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 698 / 0 EFR EF-TU receptor (.1) AT3G47090 689 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 683 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 667 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 467 / 3e-146 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G24130 446 / 2e-140 Leucine-rich receptor-like protein kinase family protein (.1) AT4G08850 437 / 4e-136 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT5G44700 415 / 2e-126 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT4G28650 404 / 2e-124 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030903 [exp] 1199 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 1193 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 1190 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 1188 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 1184 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 1182 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 1177 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 1154 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 1139 / 0 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102700 [exp] 912 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 910 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 892 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 882 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 882 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 873 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 872 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 868 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 864 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 858 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030638 pacid=23140770 polypeptide=Lus10030638 locus=Lus10030638.g ID=Lus10030638.BGIv1.0 annot-version=v1.0 ATGAGTTCAGGAAGTTTAAGTGTACACATTTGGTTTGCAGCAATACTTGTTCATCTGTGGTTTTGCTGCTGTGCTTCCTCTGGAAGTAATGAGACTGATC ATCTGGCTTTGCTAAACTTCAAGTCCATGATCTCTTCAGATCCTTTGGGTTCTCTGAGCTCATGGAATGATTCTACTCATTGGTGCAGGTGGAGCGGCGT ATCTTGCTCCGCCAGAAATGGTAGAGTCACGGCTCTAGAGCTCCAATCTCGAGAGCTCTCTGGCTCGATATCACCTCACCTTGGCAATCTCAGTTTACTG ACGGTGCTGCGTCTCTACAACAACAGCTTCGCCGAAGGGATTCCTCCGGAAATCGGCCGCCTTGGTAGGCTACAGGAGTTAGAGATTTACAATAACTCGC TTGGAGGCGAGATCCCGTCCAACATCTCAGGATGCTCCAATCTTACCTTGTTCGATGCGTTTAACAACGAGCTAGTGGGAGGATTACCGTGGCAGTTTGG TTTGCTGAACAAGCTTCAACAGTTTAGGGTAAGCAGGAACAATCTCACAGGTAGCATTCCTTCCTCTTTCGGAAACTTGTCGTCTCTTCGAAGCTTTGGT GTAGGCCGGAACCGATTGAGTGGGAAGATTCCCGACACTCTAGGCCAATGGAAGAGCATTCGGCTTATAAATTTGGAAGAAAACAACTTCTACGGTGAAA TCCCTGCTTCAATTTTCAACATTTCTACTCTTTCGGATGTATGGTTCGGGCAGAATCGACTCAATGGGACTCTTCCTTCGAACTTCGGAATATTGCTTCC GAATCTCGAGAGCTTTAACATCTACCTGAACCAGTTGAGTGGCAGTGTTCCTCCTTCCTTATCCAATGCCTCCAATTTGTTTCAACTACAACTTCAAGAC AACAATTTTACAGGGAGCATGCCTAGTATGGCAGGGTCTAGCATGCTCGGATTTATTGCCATCTCGGGCAACTCTCTTGGTAAAGATTTGAGCTTTCTCT CTTCTTTGACCAATGCCACAAGTTTGGAGTTCATCCTCTTTGATGACAACAATTTCGGAGGGAGCTTACCGCGAGATATTGGCAACTTGTCATCCAGCCT GCAATATCTTATCTTCAATGACAACAAAATATCGGGAGATATTCCGAGCGAGATACAATATCTTGTCAACTTGCAAATGGTCATGGCATACCGGAATAAC CTGTCAGGTACAATCCCGTCAAGTATCGGAAATTTGTACTCTCTTGAGCGGTTGTACTTGCATGAAAACGACATTTCGGGATCTATTCCGTTATCTATCG GGAACTTGACAAGATTATACGAGCTGAGTATTAGCATTAACCGTCTAGATGGAGAAATTCCTGCTTCTATCCGGAATTGCCAGAGATTATCAATGCTGGA CCTTTCCAACAACAATCTTAGTGGTGCCATCCGTCCCGAAGTTATGAGTCTTACTTCCTTGTCAATTGCTCTAGACTTGTCCGAAAACAACTTCACCGGT GCTATTCCGACCGAGGTGGGAAATCTAAGGAACTTGGCTTTGTTGGATCTATCTCATAACATGTTGTCAGGGAGCATTCCGAGTAGTTTGGACACTTGTG TCAGCCTAGAGTCTCTACACTTGCAAGGAAATCTACTACAAGGTAATATTCCGTCCGGTTGGAGATCTTTAAGAGGTCTTGAAGATCTGGATCTTTCTGC CAATAACTTATCAGGTCAAATTCCAGTATTCTTGGGGCAAATGAATATCTCGAAGCTTTTGAATCTGTCCTATAACAATTTCGAAGGCGAAGTGCCTGAA GGAGGAGTCTTCAGAAATAGCACCATCATTTCGGTCATTGGAAACAACAAGCTGTGTGGGGGGATTTCGGAACTTAAACTTCCTTCGTGTGACTTCAAGA GAGGCTCAAACAAGGCATTGAGCAGAAAGTGGAAGATTGTTATATCAACGGTCTCGACTATACTTTTTATCGCCTTTGTTTGTTCTTGCTTGTTCATCGT TCGACGCAGAAAGAGAGGAAATCAAGATACAGTTCCAGTTTCAGCTTCAGCTAGTGATGATTTATTGCTACAATTGTCTTACCAAAGGCTATACAAAGCT ACAGATGGCTTCGCCTCGACAAATTTAATCGGCGTGGGAAGCTTTGGCTCCGTGTACAAAGGAGTCCTTGATGAGAACGGAGCCAATACCAGTATTGCTG TGAAGGTGCTCAACCTTCACCGCAGTGGAGCTTCCAAGAGTTTTCATGCAGAATGTGAAGCATTGAAGAACATTAGACACAGAAATCTCGTAAGGATAAT GACGGTGTGTTCAAGCGTTGACCGTCAGGGGAATGATTTCAAGGCTATCATCTACGAGTTGATGGCTAATGGAAGCTTAGAGGACTGGTTGCATCCGGAT GAAGAAATAGGTGAGTCTGTTACAAGGAGCTTGAACTTCCTTCAAAGGGTTAATGTTGCTAGTGATATAGCTTCCGCAATGGATTATCTTCACAACCAAT GTAGAATTCCAATTGTTCATTGTGATCTCAAACCTAGCAACGTACTTCTTGACGAGGATATGGTGGCTCGCGTTAGTGATTTCGGGTTGGCAAGATTCCT TTCTCCGATTGCAAATCCCTCGACAAGTTCTATTAGCATAAAGGGAACAGTCGGCTATGCACCTCCAGAATACGGAATGGGAAATGAAGTCTCAATACAA GGTGACGTCTATAGCTATGGCATTCTTCTACTTGAGATGTTTATTGGGAGGAGACCGACTCACGAGTCTTTCAAAGAAGACTTGAATCTTCATAATATTG TTAAAAACGCTCTGTCAAAAGAACGGGCGATAAAAGTGGCAGATCCAATGCTACAGACTGAGTTACTCCATTTCCAGACAACAGATTCTATTGAAGATGT CAGTAGCAGTAGTAGCAGCATCTCAAAGGAAACAAAAACGGACCCAAAGGAACTGCTGAGTTCCATCCTCGAAATCGGCGTGGCTTGTTCTTTAATCATC CCAGACGATCGAATGAGTATGAGCGAGGTTCTCATAAGGCTTACCACTCTGAAGAAGTTTCTTCCAGTTGAAAGGAAGGTGATTAATGTAGCTGGCTCCG ATATGTAA
AA sequence Show only first row Show all	>Lus10030638 pacid=23140770 polypeptide=Lus10030638 locus=Lus10030638.g ID=Lus10030638.BGIv1.0 annot-version=v1.0 MSSGSLSVHIWFAAILVHLWFCCCASSGSNETDHLALLNFKSMISSDPLGSLSSWNDSTHWCRWSGVSCSARNGRVTALELQSRELSGSISPHLGNLSLL TVLRLYNNSFAEGIPPEIGRLGRLQELEIYNNSLGGEIPSNISGCSNLTLFDAFNNELVGGLPWQFGLLNKLQQFRVSRNNLTGSIPSSFGNLSSLRSFG VGRNRLSGKIPDTLGQWKSIRLINLEENNFYGEIPASIFNISTLSDVWFGQNRLNGTLPSNFGILLPNLESFNIYLNQLSGSVPPSLSNASNLFQLQLQD NNFTGSMPSMAGSSMLGFIAISGNSLGKDLSFLSSLTNATSLEFILFDDNNFGGSLPRDIGNLSSSLQYLIFNDNKISGDIPSEIQYLVNLQMVMAYRNN LSGTIPSSIGNLYSLERLYLHENDISGSIPLSIGNLTRLYELSISINRLDGEIPASIRNCQRLSMLDLSNNNLSGAIRPEVMSLTSLSIALDLSENNFTG AIPTEVGNLRNLALLDLSHNMLSGSIPSSLDTCVSLESLHLQGNLLQGNIPSGWRSLRGLEDLDLSANNLSGQIPVFLGQMNISKLLNLSYNNFEGEVPE GGVFRNSTIISVIGNNKLCGGISELKLPSCDFKRGSNKALSRKWKIVISTVSTILFIAFVCSCLFIVRRRKRGNQDTVPVSASASDDLLLQLSYQRLYKA TDGFASTNLIGVGSFGSVYKGVLDENGANTSIAVKVLNLHRSGASKSFHAECEALKNIRHRNLVRIMTVCSSVDRQGNDFKAIIYELMANGSLEDWLHPD EEIGESVTRSLNFLQRVNVASDIASAMDYLHNQCRIPIVHCDLKPSNVLLDEDMVARVSDFGLARFLSPIANPSTSSISIKGTVGYAPPEYGMGNEVSIQ GDVYSYGILLLEMFIGRRPTHESFKEDLNLHNIVKNALSKERAIKVADPMLQTELLHFQTTDSIEDVSSSSSSISKETKTDPKELLSSILEIGVACSLII PDDRMSMSEVLIRLTTLKKFLPVERKVINVAGSDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10030638 [exp]	0	1
AT5G02970			alpha/beta-Hydrolases superfam...		Lus10019914 [exp]	6.4	0.7837
AT4G28600		NPGR2	no pollen germination related ...		Lus10024926 [exp]	10.6	0.6736
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039855 [exp]	11.7	0.7658
AT2G28780			unknown protein		Lus10040846 [exp]	15.6	0.7416
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10019928 [exp]	19.8	0.6953
AT5G42905			Polynucleotidyl transferase, r...		Lus10007199 [exp]	20.3	0.7032
AT3G03305			Calcineurin-like metallo-phosp...		Lus10026788 [exp]	24.5	0.7328
AT1G10050			glycosyl hydrolase family 10 p...		Lus10011465 [exp]	26.8	0.7358
AT2G34630		GPPS, GPS1	GERANYLPYROPHOSPHATE SYNTHASE,...		Lus10023287 [exp]	35.1	0.6334
AT4G27100			Ypt/Rab-GAP domain of gyp1p su...		Lus10011159 [exp]	49.0	0.7127

Compare expression of checked genes

Lus10030638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.